PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_06612_BGI-A2_v1.0

Common Name

F383_07629

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 355aa MW: 39258.8 Da PI: 5.904

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_06612_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	199	246	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Cotton_A_06612_BGI-A2_v1.0 199 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 246 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-15	193	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.43E-8	193	250	No hit	No description
PROSITE profile	PS50888	14.519	195	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	195	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-6	199	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	201	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MESNAGTLET RSNRTALERE EVAALESLQF TDEIHRLMSA PATDNASSFT ALLELPAPQA 60 VQLIHSPDSA KLIATPAPNV EDFKGGFHFP SNGGLIERAA RFSVFAGEGN NKSDSPEATS 120 NNSSANLQKA VKSEPAETES SQPLISDPTV ENRGIKRKDR EKVKGQTKKS KTTAKESSDD 180 AEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDEIIN 240 HVQSLQRQVE FLSMRLAAVN PRIDFNFDSV FTAESGSLMD SNFSGMVMPV MWPEVQLNSN 300 RQQYPQQLHF DAFQQPVWGR EEVCNNYLTP ENSLLSYDSS ANSVSLHSNQ LKMEL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MESNAGTLET RSNRTALERE EVAALESLQF TDEIHRLMSA PATDNASSFT ALLELPAPQA  60
VQLIHSPDSA KLIATPAPNV EDFKGGFHFP SNGGLIERAA RFSVFAGEGN NKSDSPEATS  120
NNSSANLQKA VKSEPAETES SQPLISDPTV ENRGIKRKDR EKVKGQTKKS KTTAKESSDD  180
AEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDEIIN  240
HVQSLQRQVE FLSMRLAAVN PRIDFNFDSV FTAESGSLMD SNFSGMVMPV MWPEVQLNSN  300
RQQYPQQLHF DAFQQPVWGR EEVCNNYLTP ENSLLSYDSS ANSVSLHSNQ LKMEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627176.1	0.0	PREDICTED: transcription factor bHLH48-like
Swissprot	Q3EAI1	8e-99	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0B0P6K4	0.0	A0A0B0P6K4_GOSAR; Transcription factor bHLH60
STRING	EOY09403	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-109	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]