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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_06609_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
SBP |
Protein Properties |
Length: 345aa MW: 37686.9 Da PI: 9.1455 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_06609_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 132.7 | 1.2e-41 | 73 | 149 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+CqvegCe+dls++k y+ rhkvC +hsk+p+++v+g+eqrfCqqCsrfh+l efD+ krsCrrrLa+hnerrrk++
Cotton_A_06609_BGI-A2_v1.0 73 RCQVEGCEVDLSDVKAYYARHKVCVTHSKSPKAIVAGIEQRFCQQCSRFHQLPEFDKVKRSCRRRLAGHNERRRKPS 149
6**************************************************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MGSSSLSDSG GSSIDSLNNN ALKLGRNIYF NDSSAAVNDG PATMKTQSPP SQRPLGCKKP 60 RAGGMIHGGQ PPRCQVEGCE VDLSDVKAYY ARHKVCVTHS KSPKAIVAGI EQRFCQQCSR 120 FHQLPEFDKV KRSCRRRLAG HNERRRKPSP GSLFPPHFGR LSSSVIESNG RGRSFILDFT 180 AYSRVSGKDA CPTMRSLDRI PGNQNTAPGK SLQHHHPWPN NSENPSSGDI FLQGSLGGTG 240 FSSTTTSQGE WFTGVSDSSC ALSLLSNQPW GSKNRASALG VNDMMNTEPM PHGTFVNPYL 300 QTSEPADAQH FGRLELPQQN SVQHMELEQH SRSFDTSAQY VHWSL
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Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ622323 | 0.0 | KJ622323.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL15) mRNA, complete cds. |