PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06439_BGI-A2_v1.0
Common NameF383_28277
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 477aa    MW: 52995.4 Da    PI: 6.7558
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06439_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-15193252155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Cotton_A_06439_BGI-A2_v1.0 193 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 252
                                 57*******************666664478446*************************98 PP
2AP249.97.8e-16295346155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Cotton_A_06439_BGI-A2_v1.0 295 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 346
                                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-12193252IPR001471AP2/ERF domain
CDDcd000181.44E-23193262No hitNo description
SuperFamilySSF541717.85E-18193262IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-16194261IPR001471AP2/ERF domain
SMARTSM003804.8E-30194266IPR001471AP2/ERF domain
PROSITE profilePS5103219.44194260IPR001471AP2/ERF domain
PRINTSPR003672.0E-6195206IPR001471AP2/ERF domain
PfamPF008474.1E-10295346IPR001471AP2/ERF domain
CDDcd000186.45E-12295356No hitNo description
SuperFamilySSF541717.19E-18295356IPR016177DNA-binding domain
PROSITE profilePS5103219.151296354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18296355IPR001471AP2/ERF domain
SMARTSM003807.7E-32296360IPR001471AP2/ERF domain
PRINTSPR003672.0E-6336356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEMLRSSSEP QFVSYEGSPA ASSHHLIDNF YANGWTNPKH QAFVQGEKNQ SEEAQTEASM  60
ADESPIFTSF HYQAPKLEDF LGDSSSMVRY SDSQAETQED SSLTQIYDPS VSTYFDHHQD  120
LNQITGFQTF PTNSGSEVDE SSSRGRTQLT GVELPGHSIE SSGNNTTNNN KAIVSVDSDN  180
SKKIADTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QARKGRQVYL GGYDKEEKAA  240
RAYDLAALKY WGPTATTNFP ISDYSKELEE MKHATKQEFI ASLRRKSSGF SRGASIYRGV  300
TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA AIKFRGVNAV TNFEMSRYDV  360
KAIAQSSLPI GGAAKRLKLS LESEPKPMVN QKQQPPPPRC SCNSNLISFA PMKQPVSTIP  420
CGIPFDAAAA TAAFYQQNLY QHLQTANTSI SEPPGSSSTT VMSQPAAEFF LWPHPSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5869992e-36JX586999.1 Gossypium hirsutum clone NBRI_GE20975 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612814.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-168AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0B0MSW30.0A0A0B0MSW3_GOSAR; AP2-like ethylene-responsive transcription factor AIL6
STRINGGorai.011G109500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-172AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]