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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cotton_A_06238_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HB-other |
| Protein Properties |
Length: 354aa MW: 39882.9 Da PI: 8.152 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_06238_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 20 | 1.1e-06 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
+ft++++ +e++ ++ n+ p +e e LA+k ++ +qV +WFqNrR+
Cotton_A_06238_BGI-A2_v1.0 13 RFTQTEVADMETVLQEhhNQMPAREILESLAEKFsesterkgrtIVQFKQVWNWFQNRRYAI 74
6999**********9777999*********************999999***********865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MGRPPSNGGP AFRFTQTEVA DMETVLQEHH NQMPAREILE SLAEKFSEST ERKGRTIVQF 60
KQVWNWFQNR RYAIRAKSSK VPGKLNVTSM PRDDSNPVRN VLQPVAAPMP PPMAAPMSTA 120
MPATTVPVAT RHMSESFMEF EAKSSRDGAW YDVATFLAHR YMETGDPEVQ VRFAGFGPEE 180
DEWVKVRKHL RQRSLPCEAS ECVAVLPGDL ILCFQEGKDQ ALYFDAHVLD AQRRRHDVRG 240
CRCRFLVRYD HDQSEEIVPL RKVCRRPETD YRLQQLHASS NTEQKPSTNP PTATTPTETM 300
QKQQNRDVSR TPALVGVSHA NVSSIAAQTA NPESKNAAFT TTIATSTPAQ NMQE
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 2e-47 | 138 | 268 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 2e-47 | 138 | 268 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 2e-47 | 138 | 268 | 4 | 134 | SHH1 SAWADEE |
| 4iur_B | 2e-47 | 138 | 268 | 4 | 134 | SHH1 SAWADEE |
| 4iut_A | 2e-47 | 138 | 268 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 2e-47 | 138 | 268 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 2e-47 | 138 | 268 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 2e-47 | 138 | 268 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 2e-47 | 138 | 268 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 2e-47 | 138 | 268 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX584339 | 2e-72 | JX584339.1 Gossypium hirsutum clone NBRI_GE17618 microsatellite sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-133 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
