PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_06213_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 32769.2 Da PI: 8.9556 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.8 | 2.6e-15 | 54 | 103 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P+ ++K + a+ L +++eY++ Lq Cotton_A_06213_BGI-A2_v1.0 54 RSKHSVTEQRRRSKINERFQILRDLIPNT----DQKRDTASFLLEVIEYVQFLQ 103 899*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-23 | 50 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-19 | 50 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.02E-13 | 51 | 107 | No hit | No description |
PROSITE profile | PS50888 | 16.323 | 52 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-12 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-12 | 58 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MRRGKASQEE EEFGSKKTRP SSFHTLSVNA NTNTNTNINN EADGKDSDKA KAIRSKHSVT 60 EQRRRSKINE RFQILRDLIP NTDQKRDTAS FLLEVIEYVQ FLQEKVQKYE GSYQGWSSEP 120 TKLKPWRNSH WRGQSFVDHT QAIKNDPGLG STFSGKLDEK NINISPSMIA SALDSSEADP 180 VRDNEQAELA VPIQGGHPLQ RPVSEAQKCL TSNDTLNQQD DLAIEGGTIS ISSVYSQGLL 240 NTLTQALQRT GLDLSQANIS VQIDLGKRSN RGLTSSAKES ANGEDSNPVQ KRLKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017637237.1 | 0.0 | PREDICTED: transcription factor BIM2 isoform X1 | ||||
Swissprot | Q9CAA4 | 1e-100 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A1U8MB24 | 0.0 | A0A1U8MB24_GOSHI; transcription factor BIM2-like isoform X1 | ||||
STRING | Gorai.008G175100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5987 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-100 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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