PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06162_BGI-A2_v1.0
Common NameF383_24052
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 311aa    MW: 35096.8 Da    PI: 9.7024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06162_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-161663148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT+eEd+ll  +++++G g+W + +++ g+ R++k+c++rw +yl
  Cotton_A_06162_BGI-A2_v1.0 16 RGPWTAEEDKLLTAYIQKHGYGSWGSLPHKAGLERCGKSCRLRWINYL 63
                                89********************************************97 PP
2Myb_DNA-binding55.61.2e-1769114148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+++ eE++ ++++++ lG++ W++Ia++++ +Rt++++k++w+++l
  Cotton_A_06162_BGI-A2_v1.0  69 RGKFSLEEEQTIIQLHAFLGNR-WSAIAAHLP-KRTDNEIKNHWNTHL 114
                                 89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0791163IPR017930Myb domain
SuperFamilySSF466891.39E-3013110IPR009057Homeodomain-like
SMARTSM007175.1E-121565IPR001005SANT/Myb domain
PfamPF002491.8E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231770IPR009057Homeodomain-like
CDDcd001671.39E-91863No hitNo description
PROSITE profilePS5129426.13864118IPR017930Myb domain
SMARTSM007175.5E-1768116IPR001005SANT/Myb domain
PfamPF002491.6E-1669114IPR001005SANT/Myb domain
CDDcd001671.57E-1171114No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2671119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRPPSPNRKK EVRLKRGPWT AEEDKLLTAY IQKHGYGSWG SLPHKAGLER CGKSCRLRWI  60
NYLRPDIKRG KFSLEEEQTI IQLHAFLGNR WSAIAAHLPK RTDNEIKNHW NTHLKKRLIK  120
MGIDPMTHKP STSPSPKNGS NLSHMAQWES ARLQAEARLV RESKQVVPNL TTRPTRRSQL  180
TRSSPRCLDV LKAWQGVVAG MFVFSTQDPR SLTTSTLRFP SAGWGEAEEW RGQGMKGSSD  240
ADDAWFEEDS VILHSLPIEN IMEGLSDAFI LNSWMGVDES TDENTVKENG NCWDSVLNLL  300
SSTPCGSPVL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362832e-72AF336283.1 Gossypium hirsutum GHMYB25 (ghmyb25) mRNA, complete cds.
GenBankEU8264652e-72EU826465.1 Gossypium hirsutum cultivar Acala Maxxa R2R3 MYB transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635480.10.0PREDICTED: myb-related protein 315-like
SwissprotQ9LXF14e-85MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A0B0MMZ90.0A0A0B0MMZ9_GOSAR; Transcription factor MYB76-like protein
STRINGGorai.008G179800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2818533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.23e-88myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]