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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_06156_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 364aa MW: 40126.6 Da PI: 8.8515 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.8e-39 | 106 | 166 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt GGa+rnvPvG+grrk k+ss Cotton_A_06156_BGI-A2_v1.0 106 PDKILPCPRCNSKETKFCYYNNYNVNQPRHFCKNCQRYWTDGGAMRNVPVGAGRRKTKSSS 166 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 103 | 163 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-31 | 108 | 164 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.696 | 110 | 164 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 112 | 148 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MSELNDSSSI KLFGKMIPLL TFNQDETLVL DSSNRYLLSS SNSLGAVNSS HGLQLQAPIE 60 DKEKNEEDDC GSRVPLSERK PSSLESSKNE EKSETNYSQE KTLKKPDKIL PCPRCNSKET 120 KFCYYNNYNV NQPRHFCKNC QRYWTDGGAM RNVPVGAGRR KTKSSSSSLH YHHVMISEAI 180 LGAQASAVNQ ASGDSCVFTF GSDSSVFSLP RLPPSTLYRP GFPASFYSSP TYRPSVVPVA 240 TLSSASINQC APNTESSSPT PTWPFLGKHS RDEKGKPSAD SNISERRASS NSKALRIDDD 300 TEETAKSSML ATLRIKTKNT NSGGIFDGIQ SKTSDDRNYR LTTFSMLRAN PAALSRSLHF 360 HENT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703768.1 | 0.0 | PREDICTED: cyclic dof factor 1-like isoform X1 | ||||
TrEMBL | A0A2P5WMP3 | 0.0 | A0A2P5WMP3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G180400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18962 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-57 | cycling DOF factor 2 |