PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_06060_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 360aa MW: 38931.7 Da PI: 8.125

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_06060_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	11	23	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 +C+yG+rCkF H+ Cotton_A_06060_BGI-A2_v1.0 11 FCQYGERCKFLHV 23 7***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	8.793	1	25	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MIELLRNLPD FCQYGERCKF LHVIQQQPKS NAFGFGTQAI SHQQQKPNPF GFGVQNNAQS 60 KGANDFGNKQ SQFKNTWTRS SASSGAPSLR QPDNQPQATN HRCNDPESCK RIIAEDFEHE 120 RPLWKLTCYS HWKNSPCDIV GDVSYEELRA AAYDDAKRGL SLQSIIERER NLLNSKLVEF 180 ENFLRNPYRG PAGSAAAQQI PFPGATTTVL SPTTQNTVAP QSNVPPSVSS FSQLGASLNT 240 GFSPGPSVQS NNASGQPTSF SNSAQSSNVF SANNVPSANA FSFGNQQPNQ SVVASFPTNM 300 ANFSNSSATN PAINQFSAAA ISTQNFSSSS IQSPAFLNVS LSNSEVVGRE ATNVQLGYVN

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MIELLRNLPD FCQYGERCKF LHVIQQQPKS NAFGFGTQAI SHQQQKPNPF GFGVQNNAQS  60
KGANDFGNKQ SQFKNTWTRS SASSGAPSLR QPDNQPQATN HRCNDPESCK RIIAEDFEHE  120
RPLWKLTCYS HWKNSPCDIV GDVSYEELRA AAYDDAKRGL SLQSIIERER NLLNSKLVEF  180
ENFLRNPYRG PAGSAAAQQI PFPGATTTVL SPTTQNTVAP QSNVPPSVSS FSQLGASLNT  240
GFSPGPSVQS NNASGQPTSF SNSAQSSNVF SANNVPSANA FSFGNQQPNQ SVVASFPTNM  300
ANFSNSSATN PAINQFSAAA ISTQNFSSSS IQSPAFLNVS LSNSEVVGRE ATNVQLGYVN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612743.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
Swissprot	Q9FWS3	2e-69	C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBL	A0A1U8J724	0.0	A0A1U8J724_GOSHI; zinc finger CCCH domain-containing protein 16-like isoform X1
STRING	Gorai.012G009900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10724	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	5e-72	C3H family protein