PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05980_BGI-A2_v1.0 | ||||||||
Common Name | F383_10663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 331aa MW: 36879.9 Da PI: 9.9389 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.9e-30 | 266 | 324 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p ++++tYe+eHnh+k Cotton_A_05980_BGI-A2_v1.0 266 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPAMLIVTYESEHNHPK 324 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.7E-18 | 217 | 262 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 7.4E-33 | 252 | 324 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.528 | 259 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-26 | 262 | 324 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-37 | 264 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 266 | 323 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MEEVEEANKA AVQSCHRVLS LLSQPQDQVH YRNLMAETGE AVFKFKRVVS LLNSSLGHAR 60 VRKLRKLQTP FPQSIFLDNQ LHNPTDYPSK DLQLGYPQEL SSHAKSSLYL GAPCLELSSN 120 GKNPLPLAQQ PPPPAHYHFL HQQRLQLQQH QAEMLSRKSN SGINFNFDSS SCTPTMSSTR 180 SFISSLSIDG SVANMDSGNA FHLIGAPRSS DQVSQHKKKC SGKGEDGSVK CGSSGKCHCS 240 KKRKHRVKRS IKVPAISNKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSMRGCPARK 300 HVERCLEEPA MLIVTYESEH NHPKLPSQAT T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 252 | 326 | 2 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669800 | 0.0 | KF669800.1 Gossypium hirsutum WRKY transcription factor 111 (WRKY111) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017607580.1 | 0.0 | PREDICTED: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-132 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A1U8P681 | 0.0 | A0A1U8P681_GOSHI; probable WRKY transcription factor 21 | ||||
STRING | Gorai.013G104500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3567 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 2e-95 | WRKY DNA-binding protein 39 |