PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05880_BGI-A2_v1.0
Common NameF383_05625
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 567aa    MW: 62023.7 Da    PI: 6.8271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05880_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.7e-16334380455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Cotton_A_05880_BGI-A2_v1.0 334 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 380
                                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-21328399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-16333384No hitNo description
PfamPF000103.5E-13334380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-21334393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MEDDYSIPSS SILNRAKKPS MPEDGIMELL WQNGQVVMQS QNQRSFKKPS PFKYLDAGQS  60
ALREIRSSSH HQQQQQQQQQ QSVTDHLFMQ EDEMASWLHN PLSDANFDHD FCADLLYPSS  120
STAVAPCVTS TATTSAPPPP PLGRVPQVSA SAMVPASRPP IPPARRNELE STRIQNFSSL  180
SKEQPGPSNS KSVAREVTVV DSSDTPAVAP ESGASQAMPC NTEAASGEDN NNACANMSFA  240
AVAYTQSAGV SVGASKDNIA TCEATVTSSP SGSSASASAE PTAQKRGPAE DRKRKGREPD  300
DAECHSEDAE FESPETKKQS RGSSSTKRSR AAEVHNLSER RRRDRINEKM RALQELIPRC  360
NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC GMLPMMFPQH YMPTMGMGIG MGMVMDMGLS  420
RPMMPFHNVM AGSGLPTPAA SAHLDPRFPM PAFHMSPQVP VPDPSRIQPN NQSDAMLNPL  480
GMQNPNQPRI PSFADPYQQY MGLHQMQLHP PQCQATAQPS SSKPSNSKGA ENLENHPSGW  540
STIFKFHIIA WEIRRKIHAM TISNNFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338343ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3942603e-41GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609500.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_017609507.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A2P5WSA00.0A0A2P5WSA0_GOSBA; Uncharacterized protein
STRINGGorai.001G234900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-63phytochrome interacting factor 3-like 5