PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05798_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 691aa MW: 75571.6 Da PI: 6.7037 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.2 | 3.1e-11 | 282 | 338 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Cotton_A_05798_BGI-A2_v1.0 282 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 338 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 45.9 | 1.4e-14 | 383 | 432 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Cotton_A_05798_BGI-A2_v1.0 383 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 432 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-8 | 282 | 338 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.24E-19 | 282 | 348 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-15 | 282 | 348 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-12 | 283 | 347 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-23 | 283 | 352 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.411 | 283 | 346 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 284 | 295 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.19E-24 | 381 | 442 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-17 | 381 | 442 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.203 | 382 | 440 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-18 | 382 | 441 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-33 | 382 | 446 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-9 | 383 | 432 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 422 | 442 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MASMNNWLAF SLSPQEPVDH HHQSQTTVSR LGFNSDGISG TDVSGECFDL SGDSSVPSLN 60 LPPPFGILEA FNRNSNQPQA SYKKPIFSHF HFHFIFVADW NMKGSELSMV MGGSSCNTQE 120 PKLENFLGNH GCHTMYDTTT GQYPLYTTTT ARTTNGGGDE DNSTNNNTNL THGASNSNTN 180 SGNSIGLSMI KTWLRNQPAP PPTQVETKNN GGGGSGGGGA PQSLSLSMST GGGGGGSGGE 240 SSSSDNKKTP PQPPSTGVEI TQTGTNEAVA RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL 300 WDNSCRREGQ SRKGRQGGYD KEEKAARAYD LAALKYWGTT TTTNFPISNY EKELEEMKHM 360 TRQEYVASLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA 420 EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSQLPIGGA AKRLKDVEQA EMAMDMVHRS 480 DGDNINTHLP DGINTYGTSG WPTIAYQQAQ PFSMHYPYGQ RIWCKQEQDS DPDHAFHDLH 540 QLQLGSTHNF FQPSVLHNLM AMESSSMEHS SGSNTNSVIY NNTVSDGAGY GGYAIPLGTV 600 IPTDTNQNQS NDFGDNSNNE VKALGYENVY TSSDPYHSRN MYYLSQQSSS STSQASPCNN 660 WVPTAVPTIA QRSSNMAVCH GTPTFTVWND T |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017624365.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | A0A0D2S6H3 | 0.0 | A0A0D2S6H3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G263900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8655 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-141 | AP2 family protein |