PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05668_BGI-A2_v1.0
Common NameF383_02861
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 487aa    MW: 52120.3 Da    PI: 4.6227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05668_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11253298555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h+++Er RR++i +++ +L+el+P++      K +Ka++L   +eY++ Lq
  Cotton_A_05668_BGI-A2_v1.0 253 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDAIIEYVRFLQ 298
                                 99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.12E-12246302No hitNo description
SuperFamilySSF474591.96E-16246308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.723248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16250307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-13254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDDYLDQYFA SSSWSDVNFK ERSPWVLSEP DQPNALLPSS PISMIGMNHG MECLATQSTP  60
LGVGPQTNCE SLGLQFNAGV HSSGSLKGLQ VVGDMTTLSQ SFNEGGDVIC NGGESSEFQR  120
SLTGLETLCS IPQFWQPQPY DGLISSLPMG QTQMQSSSLQ GDNGNVDDGN INRFVEIDKF  180
LQLENLSAPI NAKEKQDMQN SSYLSFPADR PMTDTMIDLP SLLQSSSPAP NKGCNGTGKP  240
QVRARRGQAT DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDAI IEYVRFLQLQ  300
VKVLSMSRLG AAGAVVPLIT DGQAEGSNGL TLTPLAMGSD GVDCSPSPEQ VVFEQEVVKL  360
MESNVTIAMQ YLQSKGLCLM PIALAAAISN GKASPSSSSG PVSEERKKFG FTNSIISNDD  420
RVHNTTTCSS SSEGGVRNSN SSNSSGTGNL SGVGIHQSTS DGNFMIEKIN GCNGTFKQEV  480
NTLCTAK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642541.10.0PREDICTED: uncharacterized protein LOC108483576
TrEMBLA0A0B0M9W70.0A0A0B0M9W7_GOSAR; Transcription factor bHLH82-like protein
STRINGGorai.001G017900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.18e-60LJRHL1-like 3