PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 214aa MW: 23557.6 Da PI: 4.7592

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05656_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.5	8.1e-19	22	73	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+ykGVr +k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa +l+g+ Cotton_A_05656_BGI-A2_v1.0 22 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAAQYCLRGN 73 89***999.******933...5***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.6E-12	22	72	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-20	22	81	IPR016177	DNA-binding domain
CDD	cd00018	6.17E-27	22	82	No hit	No description
SMART	SM00380	6.5E-29	23	86	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-28	23	81	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.628	23	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-9	24	35	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-9	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MVKPTQSEST TNHGSDPTGN GSKYKGVRKR KWGKWVSEIR LPNSRERIWL GSYDSPEKAA 60 RAFDAAQYCL RGNGAKFNFP DNPPEIAGAR SLGPHEIQAV ASRFANESVN NNNAMTDPTV 120 EQYTSSSSVS VSDGGLATQV ESHETRTDWS SFLSMLDSNE GMSSDYGFYP GLGHLPGDHF 180 YPPPPPPPVD DDMDDDQNYP GDGFSQHSSF LWNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-15	23	80	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	30	KGVRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ944169	0.0	KJ944169.1 Gossypium hirsutum cultivar Reba B50 ethylene-responsive transcription factor ERF-IIb1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647700.1	1e-159	PREDICTED: ethylene-responsive transcription factor ERF017-like
Swissprot	Q84QC2	6e-53	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBL	A0A2P5XGV5	1e-157	A0A2P5XGV5_GOSBA; Uncharacterized protein
STRING	Gorai.001G019100.1	1e-145	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1614	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	3e-51	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]