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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05643_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 593aa MW: 67037.8 Da PI: 7.0179 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 91.5 | 8.7e-29 | 409 | 492 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+ ev aLi++r ++e+++r+ lk+p We+vs+ m++ g++rs+++Ckekwen+nk+++k ke+ kkr s++s+tc+yfd Cotton_A_05643_BGI-A2_v1.0 409 RWPIAEVEALIQVRCDLESKFREPGLKGPVWEQVSSLMSSFGYQRSAQKCKEKWENINKYFRKSKESGKKR-SQKSKTCSYFD 490 8*********************************************************************8.89999****** PP trihelix 84 ql 85 ql Cotton_A_05643_BGI-A2_v1.0 491 QL 492 *9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 7.52E-24 | 408 | 473 | No hit | No description |
PROSITE profile | PS50090 | 6.249 | 409 | 466 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.9E-20 | 409 | 494 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MHPIKYGAHH HHHHHHHLQQ QQFMEDDDAS SSASIFFISN PHNHQQQPVF PYPSQQHNKQ 60 HENPVTHQLF HHQFQPFQHP EPVHHHSQQQ QQPFLAVNFK LGLNENSGKK EAALPLNHQQ 120 NGATFLHGNE QQQQHSLFLP RCLPPQEDFP IKEPFWKPLN RCDDRQCSAD GAKMIEGTKY 180 NKVLQQPGQS TSERSRNLDS KYGLFGELEA IYGLGKRGEA AQAGSGSALT GENSPANVGP 240 SMNLTKFQEH DVVGANGGGG NVVATGVDHG SEASIGKEAS LRKVQKKKRK MKMKEQLSSM 300 VVFFESLVKQ VTDHQECLHK RFLQFIERME KERSVKEESW RQQEAEKHNR EAVARAHEQA 360 LASSREALIV SYLEKITGES INLPGKTPLQ QPGNAMEPFN GVKVDNSIRW PIAEVEALIQ 420 VRCDLESKFR EPGLKGPVWE QVSSLMSSFG YQRSAQKCKE KWENINKYFR KSKESGKKRS 480 QKSKTCSYFD QLGQLYSRIP ITCPTSPTPL INNDIEVQKQ GDSDFLEAYL PERDLVTAQV 540 NISGNLKDSE MNIPKLDFDG IVGENVAEGS KVKYNESHES ELDGDDNDSD KGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 280 | 289 | LRKVQKKKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00651 | PBM | Transfer from LOC_Os02g01380 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017626150.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A2P5VT69 | 0.0 | A0A2P5VT69_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G020300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16469 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 6e-47 | Trihelix family protein |