PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05603_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 295aa    MW: 32093.6 Da    PI: 4.8893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05603_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-071440126
                                TSSS-HHHHHHHHHHHHHTTTT.-HHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWkt 26
                                rg+W++eEd  l+++v+ +G+g +W +
  Cotton_A_05603_BGI-A2_v1.0 14 RGPWSPEEDATLKNYVQSHGTGgNWIA 40
                                89********************99955 PP
2Myb_DNA-binding27.76.3e-09991232146
                                 TT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  21 ggtWktIartmgkgRtlkqcksrwqk 46 
                                  g W++Ia+ ++ gRt++++k++w++
  Cotton_A_05603_BGI-A2_v1.0  99 AGKWSLIASQLP-GRTDNDVKNYWNT 123
                                 567*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-22535IPR009057Homeodomain-like
PROSITE profilePS500908.7929125IPR017877Myb-like domain
SMARTSM007179.2E-1413127IPR001005SANT/Myb domain
SuperFamilySSF466896.12E-111459IPR009057Homeodomain-like
PfamPF002494.5E-61440IPR001005SANT/Myb domain
CDDcd001671.91E-696123No hitNo description
SuperFamilySSF466896.12E-1197126IPR009057Homeodomain-like
PfamPF002498.1E-797123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-22101133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYVQ SHGTGGNWIA LPLKAGSFNS WFSRLSALRD  60
VARVADYDGL IISDQTSNME VLPKRKTTLY ALFIVKWEAG KWSLIASQLP GRTDNDVKNY  120
WNTKLKKKLL AGKSSFNVDN SGGLLNANNN NIPTQPLPYN LDYSTTSLPI LSDVSYGFSV  180
SNSSTSQNMG LDPVMQFSTP DTITNLSQSG PNLDNSHNNI VVVSSSQEGS ALSDSTGNGY  240
GEDTGSIILM DDQQFSYEFP YEFVNGVLAG PSFEFSHGDL KTSQGLNQSV ATNPY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591452e-62AJ459145.1 Gossypium hirsutum partial myb117 gene, clone pGhMYB117.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639920.11e-158PREDICTED: transcription factor MYB36-like
TrEMBLA0A2P5WDJ60.0A0A2P5WDJ6_GOSBA; Uncharacterized protein
STRINGGorai.001G024300.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2211545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-34MYB family protein