PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05602_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 359aa MW: 40108 Da PI: 7.8782

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05602_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.3e-08	125	146	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck Gd+C FaHg Cotton_A_05602_BGI-A2_v1.0 125 SACPDFRK-GNCKKGDSCEFAHG 146 67****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.3E-5	121	147	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.788	122	148	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.6E-6	125	148	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-6	125	146	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	32	156	179	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MMIRKPITRP FPTVNIPDWE PLNDSADNFL AVGFNCNAPC SPCPVEYLTA LRRYLPSNDL 60 EPDTLSDDSD VHIIDAFSCD HFRMYEFKVR RCARGRSHDW TECPYAHPGE KARRRDPRKF 120 HYSGSACPDF RKGNCKKGDS CEFAHGVFEC WLHPTRYRTQ PCKDGTCCKR RVCFFAHTPE 180 QLRVLPQQSP RGNGSGSGSS DMDYFGSPIR YRLDYVSSPT SILASPPISP PSDSPPTSPS 240 GSFNSVSELT SSVRNLQIGK AKMGTTCSRG SCFVSPRSSM LRPGSPLTPT RTPTRSGLSK 300 FELWESNNAF EEPAMERVES GRDLRTRMYA KLSEENSLDL LDPTGSGPDV GWVSELVGY

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MMIRKPITRP FPTVNIPDWE PLNDSADNFL AVGFNCNAPC SPCPVEYLTA LRRYLPSNDL  60
EPDTLSDDSD VHIIDAFSCD HFRMYEFKVR RCARGRSHDW TECPYAHPGE KARRRDPRKF  120
HYSGSACPDF RKGNCKKGDS CEFAHGVFEC WLHPTRYRTQ PCKDGTCCKR RVCFFAHTPE  180
QLRVLPQQSP RGNGSGSGSS DMDYFGSPIR YRLDYVSSPT SILASPPISP PSDSPPTSPS  240
GSFNSVSELT SSVRNLQIGK AKMGTTCSRG SCFVSPRSSM LRPGSPLTPT RTPTRSGLSK  300
FELWESNNAF EEPAMERVES GRDLRTRMYA KLSEENSLDL LDPTGSGPDV GWVSELVGY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645907.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 23-like
Swissprot	Q9M0G2	1e-109	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2P5WDH5	0.0	A0A2P5WDH5_GOSBA; Uncharacterized protein
STRING	Gorai.001G024400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1249	27	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-102	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]