PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_05510_BGI-A2_v1.0 | ||||||||
Common Name | F383_15785 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 28990.6 Da PI: 10.0932 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.7e-14 | 58 | 102 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k+ G+g+W+ I+r + k+Rt+ q+ s+ qky Cotton_A_05510_BGI-A2_v1.0 58 PWTEEEHKLFLLGLKKVGKGDWRGISRNFVKTRTPTQVASHAQKY 102 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.262 | 51 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.51E-17 | 53 | 108 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-16 | 54 | 105 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.7E-11 | 55 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-11 | 57 | 102 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-11 | 58 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.13E-10 | 58 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MLFGVRVMEG SFRKSVSMNN LSQFDQPHVS NADAGYASDD VLHGSGIGRS RERKRGVPWT 60 EEEHKLFLLG LKKVGKGDWR GISRNFVKTR TPTQVASHAQ KYFLRRNNLN RRRRRSSLFD 120 ITTDSFINST ILEEDEVVHQ ENVSSPQMNG FSMPTTFPAT LSLTDLSVTE NNYSTENRIS 180 RPPSPKANTS SYLIRPIPVL PVPPSSKMAD LNLNQKAEED RLPLSLKLST PSADEQSTAA 240 AHSSTLVVMS NGDNNSIISV A |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00630 | PBM | Transfer from PK17526.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629638.1 | 0.0 | PREDICTED: transcription factor MYB1R1 | ||||
Swissprot | Q2V9B0 | 9e-52 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A0B0N943 | 0.0 | A0A0B0N943_GOSAR; Transcription factor MYB1R1 | ||||
STRING | Gorai.007G371900.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9791 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G70000.2 | 2e-48 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|