PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05507_BGI-A2_v1.0
Common NameF383_15786
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 480aa    MW: 52636.3 Da    PI: 6.9099
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05507_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.12.4e-18103189186
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                 +W++  + +L+ea+ e+ ++l+rg+l++ +Weev++++  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+
  Cotton_A_05507_BGI-A2_v1.0 103 EWSDAAIGCLLEAYMEKLTQLNRGNLRGRDWEEVAAAVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSDGG-ITASHWPW 184
                                 5*************************************777778899*************************95.55569*** PP

                    trihelix  82 fdqle 86 
                                 f+++e
  Cotton_A_05507_BGI-A2_v1.0 185 FKKME 189
                                 ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-21101191No hitNo description
Gene3DG3DSA:3.40.1160.103.7E-69227473IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536334.71E-54240473IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.428240474IPR015963Uridylate kinase, bacteria
CDDcd042541.34E-116243474No hitNo description
PfamPF006962.1E-24244453IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MASSVDDEFS LIDDHETNPS HHHVLHHHHS YAQVQAPPPD NHNGDDDSDS AFRGANFVNN  60
NSSNATSSDV RIEKRRDQEE INDGVLKRSK QSATTEYRKD REEWSDAAIG CLLEAYMEKL  120
TQLNRGNLRG RDWEEVAAAV SERCEKQSKS VEQCKNKVDN LKKRYKLERH RMSDGGITAS  180
HWPWFKKMEE IVGNSLPAKA VVEEEKGSAS PGTVVRQSKR YTSAAPNPVG QMITMKSKSP  240
KWRRVVFKIS GAALACTGPP NIDPKVAMLI AREVAIACRL GVEVAIVVGG RNFFCGDTWV  300
AATGLDRSTA YQIGMMASVM NSILLQSLLE KMGVQACVQT AFSVQEAEPY SRVRAIRHLE  360
KGRVVIFGGI GAGTGNPLFS TDTAAALRAS EIHAEAVVKG TNVDGVYDCH SQDNNATFEH  420
ISFRDLVSRG ATTMDMMSLT FCEENGIPVV VFNLLQPGNI SKALCGDQVG TLIDQTGRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-5522647334279Uridylate kinase
3nwy_B1e-5522647334279Uridylate kinase
3nwy_C1e-5522647334279Uridylate kinase
3nwy_D1e-5522647334279Uridylate kinase
3nwy_E1e-5522647334279Uridylate kinase
3nwy_F1e-5522647334279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949737e-48GQ394973.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1996 SSR marker DPL0376 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627687.10.0PREDICTED: uncharacterized protein LOC108470751 isoform X2
TrEMBLA0A0B0N6F20.0A0A0B0N6F2_GOSAR; Uridylate kinase
STRINGGorai.007G371500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein