PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05439_BGI-A2_v1.0

Common Name

F383_02388

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 569aa MW: 61336.2 Da PI: 9.0333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05439_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cotton_A_05439_BGI-A2_v1.0 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	12.5	0.00043	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Cotton_A_05439_BGI-A2_v1.0 149 WKCEKCSKKYAVQSDWKAHSKTC 171 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-5	72	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.93E-7	72	95	No hit	No description
PROSITE profile	PS50157	10.949	73	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	67	114	144	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-4	137	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.93E-7	144	169	No hit	No description
SMART	SM00355	140	149	169	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MSNLTSASAS GEASVSSGNR TEAGSNYPQQ YFTTSQQPQT QPVKRKRNLP GNPDPDAEVI 60 ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVR KKVYVCPETN 120 CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AVESARAINP LLSPHQPGTA AASHMNLQVP QFNPHDIKLQ 240 PFSLKKEQQS FTPLRPEIPP WLASQPMLGA GPGPPHPIDL SSSSSSIFSP RLDHQDLTLH 300 GTPSANPSLV PTLPPYHHTA LPSPHMSATA LLQKAAHMGA TMSRKSGSSS VPSTVAAAAS 360 ASLMRPHQQT HVSADSAGTN NNTTTAGFGL DLHSREELDV GSSSGIIHGL APFGNRKPAA 420 NAGDDDDDNN NIAGSGATPS LLQDMINSLS SATGFDATNS FDDIAFGGIF NATKKLCGSS 480 INESFSKTTT PTVPTTTNAT RNDHHGSTAG STTTTTTTTQ GGDQGLTRDF LGLRAFSHTD 540 ILNIAGPGRN YCIDTSHEQH NQSQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MSNLTSASAS GEASVSSGNR TEAGSNYPQQ YFTTSQQPQT QPVKRKRNLP GNPDPDAEVI  60
ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVR KKVYVCPETN  120
CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AVESARAINP LLSPHQPGTA AASHMNLQVP QFNPHDIKLQ  240
PFSLKKEQQS FTPLRPEIPP WLASQPMLGA GPGPPHPIDL SSSSSSIFSP RLDHQDLTLH  300
GTPSANPSLV PTLPPYHHTA LPSPHMSATA LLQKAAHMGA TMSRKSGSSS VPSTVAAAAS  360
ASLMRPHQQT HVSADSAGTN NNTTTAGFGL DLHSREELDV GSSSGIIHGL APFGNRKPAA  420
NAGDDDDDNN NIAGSGATPS LLQDMINSLS SATGFDATNS FDDIAFGGIF NATKKLCGSS  480
INESFSKTTT PTVPTTTNAT RNDHHGSTAG STTTTTTTTQ GGDQGLTRDF LGLRAFSHTD  540
ILNIAGPGRN YCIDTSHEQH NQSQKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	145	206	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-35	145	206	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	111	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527132	0.0	HQ527132.1 Gossypium herbaceum clone NBRI_D2_310 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605509.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-121	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A0B0NH25	0.0	A0A0B0NH25_GOSAR; Zinc finger NUTCRACKER-like protein
STRING	Gorai.009G141200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-101	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]