PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05357_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 363aa    MW: 42200.7 Da    PI: 4.8261
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05357_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.82.8e-13159228270
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 
                                 Wt++e+ +L++a  +   + +r++l+   W+ev++k+++  + er+ +qC+++++ l+k+ykk+k++ ++
  Cotton_A_05357_BGI-A2_v1.0 159 WTEHETFVLLDAWGDCFLQRGRKSLRSEEWQEVAEKVSKVSMiERTDTQCRNRLDTLKKKYKKEKAMLQR 228
                                 *************************************777666**********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-17158225No hitNo description
Gene3DG3DSA:1.10.10.601.5E-4159223IPR009057Homeodomain-like
PROSITE profilePS500906.156159216IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDDIEDDARY PPNQYGVSHQ RCYGSLSRRK LPVRNLPYSR SMGNQDVNDD EVEDEEDFRR  60
EAKNREQNNV AWYIGKNIDN EDDDELDDGE EDDDDDGSDK PKGYNENSND VDLERHPKKR  120
KLKNLLSSYE FAPRVPAPAA AASSMPKPSH GGRNSLTDWT EHETFVLLDA WGDCFLQRGR  180
KSLRSEEWQE VAEKVSKVSM IERTDTQCRN RLDTLKKKYK KEKAMLQRLV LPLANGFILR  240
RAYSNCANGM DKMRDSPADS ESADSDEDIS DGLPPKKRRF RRQYDEGSFR MLADSIHKFS  300
NIYEKIENSK RHQMLELEKM RMEIHMEMEM QKRRIMENAQ AEIVKIQQGD EEDNDVSIEN  360
ASG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021298577.11e-158trihelix transcription factor ASIL2-like
TrEMBLA0A2P5VYT00.0A0A2P5VYT0_GOSBA; Uncharacterized protein
STRINGGorai.009G133300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2818033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-34Trihelix family protein