PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05257_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 431aa MW: 47827.9 Da PI: 9.6541

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05257_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.5	2e-14	77	164	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstc 79 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ ++++pk qCk++++ ++k+yk +k+ + + s++ Cotton_A_05257_BGI-A2_v1.0 77 CWSEGATEVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKVAAG--GGPSKW 157 7***********************************866677776654449**************99997..67778 PP trihelix 80 pyfdqle 86 ++f++l+ Cotton_A_05257_BGI-A2_v1.0 158 VFFEKLD 164 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.3E-26	75	166	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MEEDEEIQSY PSVVATGSSS PSSPSPASNS RTTVTVAAAP PPNSPPTDEP HEHKKAIVLA 60 LPPPQKPKSN GGGREDCWSE GATEVLIDAW GERYLELSRG NLKQKHWKEV ADIVSSREDY 120 TKTPKTDIQC KNRIDTVKKK YKLEKAKVAA GGGPSKWVFF EKLDQLIGPT AKVSANTTAA 180 VSGGGGSSSG GSADFLSKVP MGIPVGIRSS LNPFRVSQVR QQQQQQQQQE EEEKQPRMVV 240 LKNQRKQGPV DMDSEGDDDD GDDDADSFDS LPPPPTGKRA RRVVHNKSVN AGEKRRKWGN 300 SVKELTQAIL RFGEAYEQAE TAKLQQVVEM EKQRMKFAKE LELQRMQFFM KTQLEISQLK 360 QGKKGVGIFN SVACGTSHAH SHRFESFKIF KSNLQIIFGV WHLVQVILDS GHFQYRLGKV 420 LKSDRVFRLE S

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MEEDEEIQSY PSVVATGSSS PSSPSPASNS RTTVTVAAAP PPNSPPTDEP HEHKKAIVLA  60
LPPPQKPKSN GGGREDCWSE GATEVLIDAW GERYLELSRG NLKQKHWKEV ADIVSSREDY  120
TKTPKTDIQC KNRIDTVKKK YKLEKAKVAA GGGPSKWVFF EKLDQLIGPT AKVSANTTAA  180
VSGGGGSSSG GSADFLSKVP MGIPVGIRSS LNPFRVSQVR QQQQQQQQQE EEEKQPRMVV  240
LKNQRKQGPV DMDSEGDDDD GDDDADSFDS LPPPPTGKRA RRVVHNKSVN AGEKRRKWGN  300
SVKELTQAIL RFGEAYEQAE TAKLQQVVEM EKQRMKFAKE LELQRMQFFM KTQLEISQLK  360
QGKKGVGIFN SVACGTSHAH SHRFESFKIF KSNLQIIFGV WHLVQVILDS GHFQYRLGKV  420
LKSDRVFRLE S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	297	EKRRKW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527046	1e-166	HQ527046.1 Gossypium herbaceum clone NBRI_A_EYI1BW401A822Y simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449798.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Refseq	XP_017615514.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	1e-109	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A0D2UHV9	0.0	A0A0D2UHV9_GOSRA; Uncharacterized protein
STRING	Gorai.010G235700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-63	sequence-specific DNA binding transcription factors