PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05039_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 350aa    MW: 38540.1 Da    PI: 7.2027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05039_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20160209255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Cotton_A_05039_BGI-A2_v1.0 160 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 209
                                 59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-33159219No hitNo description
Gene3DG3DSA:3.30.730.104.6E-32160218IPR001471AP2/ERF domain
SMARTSM003801.4E-37160223IPR001471AP2/ERF domain
PROSITE profilePS5103223.169160217IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-23160218IPR016177DNA-binding domain
PRINTSPR003673.3E-11161172IPR001471AP2/ERF domain
PfamPF008472.4E-14161209IPR001471AP2/ERF domain
PRINTSPR003673.3E-11183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAAAMDFISS GVDQSDLYGG ELMEALEPFM KSVSSSSPFP SPSPSPSSLP STSYLSFSSS  60
ETQPNFYPNS CCYPYPTPMD SVSCPQQPQT GSTIGLNSLT QAQIHQIQLQ FHLHNNQPSY  120
LCQSSQPNTI SANSNPMVSF LCPKPVPMKH VGAPSKPTKL YRGVRQRHWG KWVAEIRLPR  180
NRTRLWLGTF DTAEEAALAY DKAAYKLRGD FARLNFPNLR HHGSHVGDYK PLPSSVDAKL  240
QAICESLVQN PKQGSKKKSS KVTADTKTRN NKKSDMAEPK PEENTAKVEN SSSLSTVQSE  300
SEGSAVSSPL SDLTFSDFDE QPWPEVVSSS ETFMLSKYPS EIDWDSILKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22159217160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6197180.0AY619718.1 Gossypium hirsutum transcription factor DRE-binding factor 2 (DBP2) mRNA, complete cds.
GenBankDQ0939640.0DQ093964.1 Gossypium hirsutum dehydration responsive element-binding protein 2 (DBP2) gene, complete cds.
GenBankKP7801980.0KP780198.1 Gossypium hirsutum C-repeat binding factor 15 (CBF15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626568.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E47e-92RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLQ6IVL30.0Q6IVL3_GOSHI; C-repeat binding factor 15
STRINGGorai.009G238800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-68related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]