PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_05000_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1761aa MW: 199508 Da PI: 5.0903

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05000_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.6e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Cotton_A_05000_BGI-A2_v1.0 29 PKRQMKTPFQLEALEKAYALEAYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.5E-19	13	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-17	17	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.779	25	85	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-16	29	84	IPR001356	Homeobox domain
CDD	cd00086	2.65E-14	30	84	No hit	No description
SMART	SM00571	2.0E-21	552	611	IPR018501	DDT domain
PROSITE profile	PS50827	16.679	552	611	IPR018501	DDT domain
Pfam	PF02791	1.9E-16	553	608	IPR018501	DDT domain
Pfam	PF05066	4.3E-15	734	801	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.1E-8	953	997	IPR028942	WHIM1 domain
Pfam	PF15613	8.2E-13	1138	1210	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1761 aa Download sequence Send to blast
MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALEA YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK QRKGAALPPE SPVDELRAMP GPDYGSGSGS 120 GSSPYMDTRK LGVSSSRGMM EDAPAVRRYY ESQQSILELR AIACVEAQLG EPLRDDGPML 180 GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS 240 DAYGLVTQSH FHESPVSGSR GRATSFVHGD EPLSRIHGIQ GQGSRALVLP QQGIIPSSSH 300 VADDSLAERE SFTNGRNAPT ICHPVLGSED SYMLSAEQTL NNDAEPRIDR KRKVSSLSDE 360 NRIAREVEAH ENRIRKELEK LEHKRRKSEE RMRKEMERHE RERRKEEERL MREKQREEER 420 TQREQKREME RRQKFLQKEY LRAEKKRQKE ELRREREEER RRVAREKATA RKIAKESMDL 480 LEDEQLELME LAAARKGMHS IIHLDHDTLQ NLESFRADNN PNISILDSLS VFPPKSVQLK 540 RPFDIQPWID SEENVGNLLM AWRFLITFAD ILRLWPFTLD EFVQAFHDYD SRLLGEIHVA 600 LLRSIIKDIE DVARTPATGL GMNQYCAANP EGGHLQIVEG AYSWGFDIRN WQHHLNPLTW 660 PEIFRQLAIS AGFGPQLKKQ NATWTYTGDN EEGKGCTDVV STLRNGSAAE NAFALMREKG 720 LLLPRRSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELADK IQKSGLRDLT TSKTPEASIS 780 VALTRDAKLF ERIAPSTYCV RPAYRKDPAD AEAILATARK KIRQFENGFL GVEDADEVER 840 DEVERDDVER DEDSECDVDE DPEVDDIATP SNANKDADYP KDEVNTCLGS KKVHASADDD 900 LDVPAEFDKD FPSFPSNTVK VDNDPSNTGQ YVASEENGTG NPDQQNIEID ESKSGESWIQ 960 GLSEGEYSHL SVEERLNALV ALIGIANEGN SIRAVLEDRL EAANALKKQM WAEAQLDKSR 1020 LKEECIIKMD FPPVMGIKTE AQLPNSAVEG SRSPFPVADN KNDEASPSIP EDQQPLLCSQ 1080 NVQNDLNSYP AERALVVQDA SMGPENSSAQ QHGYASKRSR SQLKSYIAHR AEEMYVYRSL 1140 PLGQDRRRNR YWQFVASASK NDPCSGRIFV ELHDGNWRLI DSEEAFDALL ASLDVRGIRE 1200 SHLRIMLQKI ESSFKENVRR NLHSARAMGR SGSSSENEVS EIDSSPDFTG SFDSPRSGIC 1260 GLNSDALETL PAFKIQLGRN ENERKSAMKR YQDFQRWMWN ECYNSSTLCA MKYEKKRCTQ 1320 LLAVCDTCLG SHMPEDVHCS YCHQTFRAFN NNFNFYEHEI RCKENRKLDN KDKHTLDSSL 1380 PMGINLLKSF CALVEVSIPP EALDSMWTEG QRKMWGRKLN ASSSANELLK LLTQLESAIK 1440 RDYLSSNFET TRELLGSSFQ SENDSSTDSV LPWIPQITPA VALRLLELDS SIMYVKQEKV 1500 EPPENREARA SYIKLPSRTS LFIKNKELEL KELDQDEPMK EENFADLSNS KRSSYKRGRG 1560 AREQGSGRKW QRKASGSKSD IGKQSARENN NLSFHLKQQS QRTGQSSGRG RRTVRKRAER 1620 RVANSTIVTQ MGDMVKPKSN TVSLRDLDEE WRTERFGMME TVNPPDSNST EEESDDNGQG 1680 EGYEQGNWEL DLNGASNGWN REPIEASYED DDAYEDDNGF EQMLEEESEG DLEMSDASDD 1740 VPNETRNDDG SDSADSEDYS D

Sequence ? help Back to Top

Protein Sequence Length: 1761 aa Download sequence Send to blast

MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALEA YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK QRKGAALPPE SPVDELRAMP GPDYGSGSGS  120
GSSPYMDTRK LGVSSSRGMM EDAPAVRRYY ESQQSILELR AIACVEAQLG EPLRDDGPML  180
GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS  240
DAYGLVTQSH FHESPVSGSR GRATSFVHGD EPLSRIHGIQ GQGSRALVLP QQGIIPSSSH  300
VADDSLAERE SFTNGRNAPT ICHPVLGSED SYMLSAEQTL NNDAEPRIDR KRKVSSLSDE  360
NRIAREVEAH ENRIRKELEK LEHKRRKSEE RMRKEMERHE RERRKEEERL MREKQREEER  420
TQREQKREME RRQKFLQKEY LRAEKKRQKE ELRREREEER RRVAREKATA RKIAKESMDL  480
LEDEQLELME LAAARKGMHS IIHLDHDTLQ NLESFRADNN PNISILDSLS VFPPKSVQLK  540
RPFDIQPWID SEENVGNLLM AWRFLITFAD ILRLWPFTLD EFVQAFHDYD SRLLGEIHVA  600
LLRSIIKDIE DVARTPATGL GMNQYCAANP EGGHLQIVEG AYSWGFDIRN WQHHLNPLTW  660
PEIFRQLAIS AGFGPQLKKQ NATWTYTGDN EEGKGCTDVV STLRNGSAAE NAFALMREKG  720
LLLPRRSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELADK IQKSGLRDLT TSKTPEASIS  780
VALTRDAKLF ERIAPSTYCV RPAYRKDPAD AEAILATARK KIRQFENGFL GVEDADEVER  840
DEVERDDVER DEDSECDVDE DPEVDDIATP SNANKDADYP KDEVNTCLGS KKVHASADDD  900
LDVPAEFDKD FPSFPSNTVK VDNDPSNTGQ YVASEENGTG NPDQQNIEID ESKSGESWIQ  960
GLSEGEYSHL SVEERLNALV ALIGIANEGN SIRAVLEDRL EAANALKKQM WAEAQLDKSR  1020
LKEECIIKMD FPPVMGIKTE AQLPNSAVEG SRSPFPVADN KNDEASPSIP EDQQPLLCSQ  1080
NVQNDLNSYP AERALVVQDA SMGPENSSAQ QHGYASKRSR SQLKSYIAHR AEEMYVYRSL  1140
PLGQDRRRNR YWQFVASASK NDPCSGRIFV ELHDGNWRLI DSEEAFDALL ASLDVRGIRE  1200
SHLRIMLQKI ESSFKENVRR NLHSARAMGR SGSSSENEVS EIDSSPDFTG SFDSPRSGIC  1260
GLNSDALETL PAFKIQLGRN ENERKSAMKR YQDFQRWMWN ECYNSSTLCA MKYEKKRCTQ  1320
LLAVCDTCLG SHMPEDVHCS YCHQTFRAFN NNFNFYEHEI RCKENRKLDN KDKHTLDSSL  1380
PMGINLLKSF CALVEVSIPP EALDSMWTEG QRKMWGRKLN ASSSANELLK LLTQLESAIK  1440
RDYLSSNFET TRELLGSSFQ SENDSSTDSV LPWIPQITPA VALRLLELDS SIMYVKQEKV  1500
EPPENREARA SYIKLPSRTS LFIKNKELEL KELDQDEPMK EENFADLSNS KRSSYKRGRG  1560
AREQGSGRKW QRKASGSKSD IGKQSARENN NLSFHLKQQS QRTGQSSGRG RRTVRKRAER  1620
RVANSTIVTQ MGDMVKPKSN TVSLRDLDEE WRTERFGMME TVNPPDSNST EEESDDNGQG  1680
EGYEQGNWEL DLNGASNGWN REPIEASYED DDAYEDDNGF EQMLEEESEG DLEMSDASDD  1740
VPNETRNDDG SDSADSEDYS D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	383	404	KRRKSEERMRKEMERHERERRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-110	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641695.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2RDR8	0.0	A0A0D2RDR8_GOSRA; Uncharacterized protein
STRING	Gorai.010G256900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1