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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_04879_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
ERF |
Protein Properties |
Length: 317aa MW: 35302.9 Da PI: 5.3088 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_04879_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 50 | 98 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+ +++g
Cotton_A_04879_BGI-A2_v1.0 50 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAAISIKG 98
56******.**********965...5**********************99987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010102 | Biological Process | lateral root morphogenesis |
GO:0010432 | Biological Process | bract development |
GO:0010451 | Biological Process | floral meristem growth |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MSTSKTMENH FKYEPVVQTQ AGFTLLQRNL SPPQPGERRG RRKQAEPGRF LGVRRRPWGR 60 YAAEIRDPTT KERHWLGTFD TAQEAALAYD RAAISIKGAQ ARTNFVYSDN SCFHVLSPFD 120 QFLTSFQTQQ PKQAINHGVN SEPVPHQPDI SHSENTIPTP IIKPNNNDPS SSSLSSSSSS 180 YGSSVDDSAF FFSTDTNSGY LASIVPRNCL NPPSSNPTSS HVSNQNQSHS GNNNYVLPID 240 VTNTEFPCFV EGMDQESLWS SFDQQSWELS DIVNPPLMDE DGCMKAFHPY NDNPMMIPQA 300 SSMAPFGDIV DFGYSLF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ524437 | 0.0 | HQ524437.1 Gossypium herbaceum clone NBRI_G002 simple sequence repeat marker, genomic sequence. |