PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04878_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 440aa    MW: 47633.6 Da    PI: 7.3144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04878_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-114467326
                                S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                                ++ C +++rtG+C yG+rC+F+H+
  Cotton_A_04878_BGI-A2_v1.0 44 EADCIYYLRTGFCGYGSRCRFNHP 67
                                689********************8 PP
2zf-CCCH38.22.3e-1290114327
                                 S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                 ++ C++++rtGtC++G++Ck++H++
  Cotton_A_04878_BGI-A2_v1.0  90 QPVCQYYMRTGTCRFGSSCKYHHPK 114
                                 689********************96 PP
3zf-CCCH39.21.2e-12136159326
                                 S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                 +++C+++++tG Ck+G++C+F+H+
  Cotton_A_04878_BGI-A2_v1.0 136 EKECSYYMKTGRCKFGATCRFHHP 159
                                 689********************8 PP
4zf-CCCH32.71.2e-10298322327
                                 S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                 +++C+++++tG Ck+ ++Ck++H+p
  Cotton_A_04878_BGI-A2_v1.0 298 QPECQYYLKTGDCKFESSCKYHHPP 322
                                 799********************97 PP
5zf-CCCH26.89e-09347368627
                                 -SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                                 C ++++ G Ck+G+ CkF H++
  Cotton_A_04878_BGI-A2_v1.0 347 CTHYSQHGVCKFGPACKFDHPM 368
                                 ********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1924169IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-64168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-64470IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-94467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-54767IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.36187115IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-787114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-690115IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-1090114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-592114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549133161IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5133160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-10136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934295323IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4295322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5298323IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4301322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305341369IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011341368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6345372IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6347368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4347371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEWGPESDLE PEWTSSGPET GPEEPIQRLE LGIEPKSYPE RPNEADCIYY LRTGFCGYGS  60
RCRFNHPHDR AMVMGPGISS IGEYPERAGQ PVCQYYMRTG TCRFGSSCKY HHPKERGGFV  120
IHVPLNSYGY PLRLGEKECS YYMKTGRCKF GATCRFHHPI SSVVQVSTPS STPQVPHMPT  180
PVPTPTLYST VQSPSGLSSQ QYGVVMARPP LMPGSYVQGP YGSLLLSPSM VSFPSWNPYP  240
GLVNSSTQPS VGSRSVFGGT PLSPSAPAYT RSYQLVSSSV GSSSSNQKEQ LFPEIPNQPE  300
CQYYLKTGDC KFESSCKYHH PPEVVAPKSD VILSTLGLPL RSGAPHCTHY SQHGVCKFGP  360
ACKFDHPMEQ LSYSPLTSSL SDIPVGSTIA ALAPSSDLRH KLLSGSGKDS DLAVMSSSVS  420
SSSESIGLVF SEGATIPPSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639996.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-135C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2P5WSY70.0A0A2P5WSY7_GOSBA; Uncharacterized protein
STRINGGorai.005G058800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-131C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]