PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04718_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 466aa MW: 51010.8 Da PI: 5.1633

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04718_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	358	395	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Cotton_A_04718_BGI-A2_v1.0 358 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 395 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	346	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-5	356	399	No hit	No description
SuperFamily	SSF47459	1.11E-11	356	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-9	360	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MAEEFHAGIC GETWWDSSKA MFTGCSSPCS TGLAADMGSF GWSADMVDIK ARSSCEESKD 60 SLAFPLGAQQ GDSDSCGSSI LNDSTLQMMG FGLSSSTTSD WNQSLLRSNV RSESYNSVLQ 120 EGINSRLSCR KETGMDSSQI QKEWSPRSYT SPGEDSSITT FKPLNQDFSL EQQRLNSLTS 180 SGNSRPTCQF PIGSVSYGYP STLLQTLFDP DSQAQSQQLS LFNNNRSIDY MSATATYGAN 240 NATESSPSWP RPAPFVRPSL PKQQPSNLHF TNNAPLWNAS ATGVNDVKAG FSPSQLQPEF 300 LLQTFEEKPN CPSLTKKTNT EEVRNLGSPV KKGLSSEPPL LKRPRIETPS PLPTFKVRKE 360 KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVN VLSTPYMKQA VPSTQQQSTE 420 SLKEPEGPKQ DLRSLGLCLV PISSTFPVAN ETTVDFWTPT FGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MAEEFHAGIC GETWWDSSKA MFTGCSSPCS TGLAADMGSF GWSADMVDIK ARSSCEESKD  60
SLAFPLGAQQ GDSDSCGSSI LNDSTLQMMG FGLSSSTTSD WNQSLLRSNV RSESYNSVLQ  120
EGINSRLSCR KETGMDSSQI QKEWSPRSYT SPGEDSSITT FKPLNQDFSL EQQRLNSLTS  180
SGNSRPTCQF PIGSVSYGYP STLLQTLFDP DSQAQSQQLS LFNNNRSIDY MSATATYGAN  240
NATESSPSWP RPAPFVRPSL PKQQPSNLHF TNNAPLWNAS ATGVNDVKAG FSPSQLQPEF  300
LLQTFEEKPN CPSLTKKTNT EEVRNLGSPV KKGLSSEPPL LKRPRIETPS PLPTFKVRKE  360
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVN VLSTPYMKQA VPSTQQQSTE  420
SLKEPEGPKQ DLRSLGLCLV PISSTFPVAN ETTVDFWTPT FGGTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605660.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1U8MMQ3	0.0	A0A1U8MMQ3_GOSHI; transcription factor bHLH112-like isoform X1
STRING	Gorai.009G175300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	5e-68	bHLH family protein