PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04715_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 405aa    MW: 44742.2 Da    PI: 8.6823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04715_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012170193123
                                 EEETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                 y+C++Cg+ F+  +  ++H  + H
  Cotton_A_04715_BGI-A2_v1.0 170 YVCQKCGENFKKLEAIESHHLStH 193
                                 9******************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.702170194IPR007087Zinc finger, C2H2
PROSITE patternPS000280172193IPR007087Zinc finger, C2H2
SuperFamilySSF563992.3E-16195402No hitNo description
Gene3DG3DSA:3.90.228.101.5E-8222375IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSSAWLTSLK RSVNCKPKLP DVKEPAANDS TEKNSPCLCS SGCSRSLSNL RDVINGSKRQ  60
ADKAPRIGSP TSIASSEIIN QITHQAVFTD SKCVLEIKTE CSGNDDGKGG STFVGTLRPG  120
TPGPGDRFME PAYNSRRSRK IIAGPSLMRS SCGISSSKPR RSLDFESQRY VCQKCGENFK  180
KLEAIESHHL STHAVTALSE GDSSKKIVEL ICQTSFLEPE NKFGEIERIL KIHNMQRTLV  240
QFEDYREMVK LKANKLSKKH PRCLADGNEL LRFYGSTVAC SLGMENTSSL CTLEQCEVCQ  300
ILRQGFFSKR EANGCWGVFT SSTSKRAMES VELDKEKHSL RKALVVCRVI AGRVVKGLEK  360
MREMEGQSSF DSVAGKADCH SDIEELYSLS PRALLPCFIL IICKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606315.10.0PREDICTED: uncharacterized protein LOC108452980
TrEMBLA0A1U8MJ250.0A0A1U8MJ25_GOSHI; uncharacterized protein LOC107938217
TrEMBLA0A2P5Y1140.0A0A2P5Y114_GOSBA; Uncharacterized protein
STRINGGorai.009G175600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-119C2H2 family protein