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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_04612_BGI-A2_v1.0 |
Common Name | F383_18115 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 395aa MW: 43930.6 Da PI: 6.5095 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_04612_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 170.5 | 5.5e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83
lppGfrFhPtdeelv++yL+ kv + ++ i+evd++++ePw+Lp +k +e+ewyfFs rd+ky++g r+nrat +gyW
Cotton_A_04612_BGI-A2_v1.0 21 LPPGFRFHPTDEELVTFYLASKVFNGSFCG-VEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPSGLRTNRATGAGYW 102
79*************************877.45***************8888899**************************** PP
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
katgkd+ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl
Cotton_A_04612_BGI-A2_v1.0 103 KATGKDREVYSAsTGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148
**********9878889***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010014 | Biological Process | meristem initiation |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MLAVEEILSE LAEEEVNGHG LPPGFRFHPT DEELVTFYLA SKVFNGSFCG VEIAEVDLNR 60 CEPWELPDVA KMGEREWYFF SLRDRKYPSG LRTNRATGAG YWKATGKDRE VYSASTGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSCRPSCKE EWVICRIFHK TIEKKNALAQ 180 GQSYVLAVSS SSTTFLPPLL ETPTPLLKSE SQTLMQAHNS FLIHRHENDL KSLINPVVSQ 240 SQSQLFPSNG LQPSYSPTST FATTDKNAVT NTTTTTSSAA MLFKSLFSHQ DCLFKEQAAF 300 PKQCKAEADF SYLNLPAANT LNWMDRIHPS PPCQNPLFFD MDYSVLGFAE GVRGTARGDT 360 NAHDMSTSIS INRASGQMIL NPPTTTASGE SGPLD
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-51 | 21 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 21 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 21 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 21 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3ulx_A | 3e-51 | 12 | 173 | 9 | 171 | Stress-induced transcription factor NAC1 |
4dul_A | 3e-51 | 21 | 170 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 21 | 170 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC847205 | 0.0 | KC847205.1 Gossypium hirsutum NAC domain protein NAC28 mRNA, complete cds. |
Publications
? help Back to Top |
- Chen C, et al.
Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] - Gonçalves B, et al.
A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] - Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] - Espinosa-Ruiz A, et al.
TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]
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