PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 270aa MW: 29939.4 Da PI: 4.6987

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04485_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.9	1e-17	29	78	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdps+ + r++lg+f+tae+Aa a+++a ++++g Cotton_A_04485_BGI-A2_v1.0 29 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAALAYDRASRSMRG 78 678****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.47E-29	28	85	No hit	No description
PROSITE profile	PS51032	20.205	29	86	IPR001471	AP2/ERF domain
SMART	SM00380	5.0E-33	29	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-20	30	87	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-28	30	86	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-10	30	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.2E-8	30	41	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.2E-8	52	68	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDFSNSKSSS SKSKRKQQTQ HQQQQQETRF LGVRRRPWGR YAAEIRDPST KERHWLGTFD 60 TAEDAALAYD RASRSMRGSK ARTNFVYSDM PAGSSVTSII SPDEFQHDIS SIFSINPPFH 120 HQNEANHNQI FFNQDPFNAC QFSSGLPAQE SDAVQSYRPI TGLMEAGNGG SPQFRDNSSE 180 LPPLPPDVSS TCYGYGSGVD GSDMGYGAWN DTGLFGFSDQ NSNGFDSYVG FNSYELEQDS 240 PFLENMPLPS LPNSVGNAFD LGSSSTYFFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-20	30	85	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00163	DAP	Transfer from AT1G28160	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578312	1e-111	JX578312.1 Gossypium hirsutum clone NBRI_GE10307 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016730394.1	0.0	PREDICTED: ethylene-responsive transcription factor LEP-like
Swissprot	Q9FZ90	2e-49	ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBL	A0A1U8MXT5	1e-179	A0A1U8MXT5_GOSHI; ethylene-responsive transcription factor LEP-like
STRING	Gorai.008G155600.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28160.1	2e-50	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]