PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04481_BGI-A2_v1.0
Common NameF383_22180
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 288aa    MW: 32744 Da    PI: 9.3011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04481_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.6e-34591991128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 
                                 lp+G++F+Ptd+el+ e+L+ kv+++       ++++   i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+
  Cotton_A_04481_BGI-A2_v1.0  59 LPAGVKFDPTDQELL-EHLEGKVRSDArklhplIDEFIPtIEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKR 139
                                 799************.99******9996665443332333665557**********.555666688***************** PP

                         NAM  76 ra....tk..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                 r+    t+  + +W++tgk+++v+  +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Cotton_A_04481_BGI-A2_v1.0 140 RKvhtdTEggETRWHKTGKTRPVFI-SGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199
                                 *745553344667************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3854218IPR003441NAC domain
PROSITE profilePS5100533.85659218IPR003441NAC domain
PfamPF023656.7E-1660199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTWCNDCSDV QTIERSSPPS YHKTVIAQRH KDCLLRACPS CGHQIKYRDQ GGIHDLPGLP  60
AGVKFDPTDQ ELLEHLEGKV RSDARKLHPL IDEFIPTIEG ENGICYTHPE KLPGVSKDGL  120
VRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVFISGKVKG YKKILVLYTN  180
YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VISKVFYQTQ PRQCGSIKDA LKLQSGHEAS  240
HHLKNNNNNG LVEFYNPSFI SFDQGGQSRA NPTQLLPHFA VHDGSFIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141460.0JQ914146.1 Gossypium hirsutum NAC domain protein 15 (NAC15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635339.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-130NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0B0MNG20.0A0A0B0MNG2_GOSAR; NAC domain-containing 8-like protein
STRINGGorai.008G155200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-133NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]