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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04469_BGI-A2_v1.0 | ||||||||
Common Name | F383_33942 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 23467.9 Da PI: 8.7723 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.2e-12 | 12 | 61 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ ++ L +llP++ ++++ ls + + +Av+YIk Lq Cotton_A_04469_BGI-A2_v1.0 12 ERKIIEKNRRNHMKNLYSMLNSLLPHQ--NSKEPLSLPDQVDEAVKYIKRLQ 61 5789**********************6..26666*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.75E-6 | 7 | 65 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-12 | 7 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.738 | 8 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-10 | 10 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 12 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-4 | 14 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MKRSRCSSAK VERKIIEKNR RNHMKNLYSM LNSLLPHQNS KEPLSLPDQV DEAVKYIKRL 60 QTKLKESRER KESLMGRTRS YKCTQSNDST KPAEIRINEK GSAMEVALMT GPGSQYMFYE 120 MIRIFHEDGA HVLNANFWVV GNTIFHIVHA EIGEFGVAKI IKEKLNKFVN EDRCREEELE 180 QELYWDYEIP PETWNFHIM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636698.1 | 1e-148 | PREDICTED: transcription factor bHLH36-like | ||||
TrEMBL | A0A0B0N409 | 1e-147 | A0A0B0N409_GOSAR; Transcription factor bHLH36-like protein | ||||
STRING | Gorai.008G154300.1 | 1e-144 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-38 | bHLH family protein |