PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04445_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 861aa MW: 95072.8 Da PI: 5.0704

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04445_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	657	695	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr ++P++ +k ls Le++++Y+ Lq Cotton_A_04445_BGI-A2_v1.0 657 RQLIQDRIKELRGIIPHN----GKPLSIDHLLEQTIKYLIFLQ 695 67799**********9....788************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.6E-7	10	48	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.248	644	694	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MGEPEKGSML KQTLKNLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLVNSMLQK 60 FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QVCFFPFLLF PQFFSYFSFM 120 VTLILPLCPI HTVLHAYNFC TVAKISNYCL LWLQILERLD FLDETKKLFC DVGSFHGLTP 180 LEIEACNQDD SFAALRSCGN IYNENLATEL YGFPREPKGW PCSLKNVTES SIFMREIRDP 240 SVNSVVQNLS HLRNQRQTSN AEALFLSSGK ISPVNCLAAY TPCTSTWRSE GSILTSFETS 300 FPSESGIWDS PNMLPKANDL ALSGNMEQKL QGASTFSSLY SIGELVDAEL PTLDSYGKTA 360 EYQCSFGTNS RLLDDAINLQ RITEEFNPAD FTIDLCNSFN LDDLSQLFSP LPQHDINGTG 420 ATIISDVSSS VGVTSVSSAL VGGDTLVDIP VQQTANSLQS SITEASISNA EISTIVHDNG 480 TDLFDGVGLD YAFGKTGESL EDIIVPLLHG DNATVTSGMS ETVSQLDVRA MNGKRKGLFS 540 ELGLEKLLDG VNNSSHATKS SVEDQLSIMK RRKTESSSSS FCQGQFVGLS YSGGSMNPVH 600 HSHTIFNKDI HRKSQVGAWI DYSYSVNGGQ AVAATSKKPG KKRAKPGEST RPRPKDRQLI 660 QDRIKELRGI IPHNGKPLSI DHLLEQTIKY LIFLQGVTKY ADKIKQADEP KIIGNEDGML 720 PKHNMISGGA TWAFEVGAQS IPIVVKDLNP PGQMLIEMLC EDQGFFLEIA NVIRGIGLNI 780 LRAVMELQED KIWARFIVEA KEQVERTCII WSLLPLLQQT GGSGIDSASQ PSNDVNGGIP 840 LSNNYLQPFP LPPLNMAETF Q

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MGEPEKGSML KQTLKNLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLVNSMLQK  60
FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QVCFFPFLLF PQFFSYFSFM  120
VTLILPLCPI HTVLHAYNFC TVAKISNYCL LWLQILERLD FLDETKKLFC DVGSFHGLTP  180
LEIEACNQDD SFAALRSCGN IYNENLATEL YGFPREPKGW PCSLKNVTES SIFMREIRDP  240
SVNSVVQNLS HLRNQRQTSN AEALFLSSGK ISPVNCLAAY TPCTSTWRSE GSILTSFETS  300
FPSESGIWDS PNMLPKANDL ALSGNMEQKL QGASTFSSLY SIGELVDAEL PTLDSYGKTA  360
EYQCSFGTNS RLLDDAINLQ RITEEFNPAD FTIDLCNSFN LDDLSQLFSP LPQHDINGTG  420
ATIISDVSSS VGVTSVSSAL VGGDTLVDIP VQQTANSLQS SITEASISNA EISTIVHDNG  480
TDLFDGVGLD YAFGKTGESL EDIIVPLLHG DNATVTSGMS ETVSQLDVRA MNGKRKGLFS  540
ELGLEKLLDG VNNSSHATKS SVEDQLSIMK RRKTESSSSS FCQGQFVGLS YSGGSMNPVH  600
HSHTIFNKDI HRKSQVGAWI DYSYSVNGGQ AVAATSKKPG KKRAKPGEST RPRPKDRQLI  660
QDRIKELRGI IPHNGKPLSI DHLLEQTIKY LIFLQGVTKY ADKIKQADEP KIIGNEDGML  720
PKHNMISGGA TWAFEVGAQS IPIVVKDLNP PGQMLIEMLC EDQGFFLEIA NVIRGIGLNI  780
LRAVMELQED KIWARFIVEA KEQVERTCII WSLLPLLQQT GGSGIDSASQ PSNDVNGGIP  840
LSNNYLQPFP LPPLNMAETF Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635985.1	0.0	PREDICTED: transcription factor bHLH157
TrEMBL	A0A1U8NQZ5	0.0	A0A1U8NQZ5_GOSHI; transcription factor bHLH157-like
STRING	Gorai.003G076000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15615	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	6e-48	conserved peptide upstream open reading frame 7