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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_04430_BGI-A2_v1.0 |
Common Name | F383_08065 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
FAR1 |
Protein Properties |
Length: 246aa MW: 28031.9 Da PI: 8.4698 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_04430_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 91.6 | 1e-28 | 88 | 175 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84
fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++e
Cotton_A_04430_BGI-A2_v1.0 88 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIMRHRAETRVGCRAMILVRKVSSGKWVVTKFVKE 168
******************************************9988..99********************************* PP
FAR1 85 HnHelap 91
H+H+l+p
Cotton_A_04430_BGI-A2_v1.0 169 HTHPLMP 175
****986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MLVLAVEFRV HGDGNGGMML NPVQAEASSS MENDNETGEN PVEGVFQPGL NEKLDRTSPQ 60 RDDIPEIVLA DEPYVGQEFE SEASAHAFYN AYATRVGFII RVSKLSRSRR DGSAIGRALV 120 CNKEGFRMPD KREKIMRHRA ETRVGCRAMI LVRKVSSGKW VVTKFVKEHT HPLMPGKGRT 180 DCIYDQNPNE HDKIRELTHQ LAIEKKRSAT YKRHLELIFE QIDEYNKSLS KKIQHIVDGV 240 REIENK
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX579447 | 1e-114 | JX579447.1 Gossypium hirsutum clone NBRI_GE11686 microsatellite sequence. |