PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04414_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 722aa MW: 83411.1 Da PI: 6.2619

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04414_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	78.2	1.5e-24	11	270	3	266
GRAS 3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 +lLl+cAea+++gdl++a+++L ++ l p+ R++ yf+ AL +r ++ + ++ +p ++ a+ Cotton_A_04414_BGI-A2_v1.0 11 RLLLSCAEAIENGDLKRADKFLHNILILadERPYYfADESRVVRYFADALVRRAYG-LHPASSYFPFP-------VDP--AQY 83 79*******************9988834334445799************9.33333333332.......233..333 PP GRAS 83 lfsevsPilkfshltaNqaIle..avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163 + +++ i + + a++e a+ g++r+H iDf+i + + + l++L + +++p s+R+ + +p +++ +l++ +e Cotton_A_04414_BGI-A2_v1.0 84 YHYNCYHINGVIKKVIDDALMEknALMGNRRLHLIDFSIPYYIIEGSVLRTLPNYSGDPLSVRVSYIPPPFLKKQVKLSRQRE 166 456666777777888888888755899**************************************9999****** PP GRAS 164 rLakfAeelgvpfe..fnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 L+k A+e++v+ e +v++a++l++++ eL++k +E+++V ++lh+ll++ ++e L +k+++P +v++ Cotton_A_04414_BGI-A2_v1.0 167 FLTKEAKEVNVKWEdeLKVVYANSLAEMDECELDFKGsrdDEMVVVYYKFKLHKLLRDAKAMER----ELVRLKEINPMIVIM 245 *******996338889999******9998888************99998888....8999******* PP GRAS 242 veqeadhnsesFlerflealeyysa 266 + a++++++Fl+ + ++++yys Cotton_A_04414_BGI-A2_v1.0 246 LDFYANRSDSNFLRCLEDSFQYYSN 270 *********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.319	1	383	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-22	11	270	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MASSFSHTAL RLLLSCAEAI ENGDLKRADK FLHNILILAD ERPYYFADES RVVRYFADAL 60 VRRAYGLHPA SSYFPFPVDP AQYYHYNCYH INGVIKKVID DALMEKNALM GNRRLHLIDF 120 SIPYYIIEGS VLRTLPNYSG DPLSVRVSYI PPPFLKKQVK LSRQREFLTK EAKEVNVKWE 180 DELKVVYANS LAEMDECELD FKGSRDDEMV VVYYKFKLHK LLRDAKAMER ELVRLKEINP 240 MIVIMLDFYA NRSDSNFLRC LEDSFQYYSN TCRFWGESDF GFFGYLWECA CEDFNPNPLP 300 LQSLQPFSEG LTLNRLAALA EIYDILKHLC YRYELPLALT RTSKTNDMNE TMSDPNKKHT 360 FLIQSSYCYV KDWNAYRFIN SCKIDTKSII DKALKSRDGY HFEPSIKLDK LDYSYPIGPK 420 YYNIDVAVAI CLQNCYTSND VYGVEFYWPI TESEKSKSLA LNIFNDWKLM KTKFVTVKVQ 480 GTQFRFQEEV ISNIPTSSNT TRTLEIAEEA RDVHAKEING HIEQGVIPNC NSPIPIHSSS 540 KVVAAPFNTL EGPYNKDKRK RKVEENGTST VKVFKNRNHE KASSNGDIAS DFNKNDGNLS 600 FDNWMEPQCS SSESVGEKAE IMEASVRNRD RLESSIGKPN HGRNIAAAIE IPNDEPSFNT 660 NQLDEFQSSS SESDDETTLR EQRSWYREDV RTYLVSSFTN KEKKRLNRWE TSELSGYVAS 720 FN

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MASSFSHTAL RLLLSCAEAI ENGDLKRADK FLHNILILAD ERPYYFADES RVVRYFADAL  60
VRRAYGLHPA SSYFPFPVDP AQYYHYNCYH INGVIKKVID DALMEKNALM GNRRLHLIDF  120
SIPYYIIEGS VLRTLPNYSG DPLSVRVSYI PPPFLKKQVK LSRQREFLTK EAKEVNVKWE  180
DELKVVYANS LAEMDECELD FKGSRDDEMV VVYYKFKLHK LLRDAKAMER ELVRLKEINP  240
MIVIMLDFYA NRSDSNFLRC LEDSFQYYSN TCRFWGESDF GFFGYLWECA CEDFNPNPLP  300
LQSLQPFSEG LTLNRLAALA EIYDILKHLC YRYELPLALT RTSKTNDMNE TMSDPNKKHT  360
FLIQSSYCYV KDWNAYRFIN SCKIDTKSII DKALKSRDGY HFEPSIKLDK LDYSYPIGPK  420
YYNIDVAVAI CLQNCYTSND VYGVEFYWPI TESEKSKSLA LNIFNDWKLM KTKFVTVKVQ  480
GTQFRFQEEV ISNIPTSSNT TRTLEIAEEA RDVHAKEING HIEQGVIPNC NSPIPIHSSS  540
KVVAAPFNTL EGPYNKDKRK RKVEENGTST VKVFKNRNHE KASSNGDIAS DFNKNDGNLS  600
FDNWMEPQCS SSESVGEKAE IMEASVRNRD RLESSIGKPN HGRNIAAAIE IPNDEPSFNT  660
NQLDEFQSSS SESDDETTLR EQRSWYREDV RTYLVSSFTN KEKKRLNRWE TSELSGYVAS  720
FN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	4e-38	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728591.1	1e-165	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X5
TrEMBL	A0A2P5RKF3	0.0	A0A2P5RKF3_GOSBA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-23	GRAS family protein