PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04408_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 550aa    MW: 63589.2 Da    PI: 6.2915
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04408_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS97.61.9e-30133813374
                        GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                 +lLl+ Aea+++gdl++a++lL+++  l  +s  g    +R+++yf+ AL +r ++        l+p ++          +++
  Cotton_A_04408_BGI-A2_v1.0  13 RLLLSSAEAIEDGDLKRADELLQKILILadQSTFGfGDQRRVVKYFADALVRRAYG--------LHPASS----------YFT 77 
                                 79**********************998867788898999*****************........222222..........222 PP

                        GRAS  83 lfsevsPilkfshltaNqaIleavege.......ervHiiDfdisqGlQWp..aLlqaLasRpegppslRiTgvgspesg.sk 155
                                 + ++  P++       N  I + ++ e       +r+H iDf + +   +   + l++L++ +++p  +R+  + +p  +   
  Cotton_A_04408_BGI-A2_v1.0  78 FPVDPAPYYHYNSYYINYVIKKVIDDEknasngnRRLHLIDFPVPYDNNYFegSVLRTLTTFSGDPLPVRVSYILPPFLKkYV 160
                                 23445555555555555555554444333333439***************7668**********************8877788 PP

                        GRAS 156 eeleetgerLakfAeelgvpfe..fnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvks 233
                                 e  +++ e L+k A +l+v++e   +v++a++l++++ ++L++k+   +E+++V   ++lh+l+++  +++    e+++ +k+
  Cotton_A_04408_BGI-A2_v1.0 161 EFSRKIMEFLTKDAMNLNVKLEneLKVVYANSLAEVDEDKLDFKTrreDEMVVVYYKFKLHKLVRDAEAMKR---EFVR-LKE 239
                                 9999****************97226678999************99999****************88888888...8876.7** PP

                        GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                 ++P++v++ +  ++h++ +Fl+ f ++++y s    ++ +  +   +++ +        + +n  aceg++ + rh+tl++W+
  Cotton_A_04408_BGI-A2_v1.0 240 INPTIVIMLDFYSNHSDFNFLTCFKDSFQYSSNTCTCWGEADSGFGRNEYW--------WECNRDACEGNNLIRRHQTLSEWQ 314
                                 **************************************6661111223333........3366779***************** PP

                        GRAS 317 erleeaGFkpvplsekaak...qakl.llrkvk..sdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                                 + +++ GF+ +pl+++  +   + ++ ll + +  ++  +++   +e+++l+lg k+ p++++SaW+
  Cotton_A_04408_BGI-A2_v1.0 315 RLFSMGGFSRIPLNHTKDDlsnEEEClLLTERHilDNQTSLKimgKEEECLILGYKGCPMFFLSAWK 381
                                 ************98875431113333144444445555666677899*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.4341352IPR005202Transcription factor GRAS
PfamPF035146.6E-2813381IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDFDLFDTET ALRLLLSSAE AIEDGDLKRA DELLQKILIL ADQSTFGFGD QRRVVKYFAD  60
ALVRRAYGLH PASSYFTFPV DPAPYYHYNS YYINYVIKKV IDDEKNASNG NRRLHLIDFP  120
VPYDNNYFEG SVLRTLTTFS GDPLPVRVSY ILPPFLKKYV EFSRKIMEFL TKDAMNLNVK  180
LENELKVVYA NSLAEVDEDK LDFKTRREDE MVVVYYKFKL HKLVRDAEAM KREFVRLKEI  240
NPTIVIMLDF YSNHSDFNFL TCFKDSFQYS SNTCTCWGEA DSGFGRNEYW WECNRDACEG  300
NNLIRRHQTL SEWQRLFSMG GFSRIPLNHT KDDLSNEEEC LLLTERHILD NQTSLKIMGK  360
EEECLILGYK GCPMFFLSAW KPKVEDGHFN STSTNHQFRQ VQFYWPAKMI EISKSLALRI  420
FNDLKHMKKM FVEVKIQGTE IGSQKEVIPN ISTSRCLQAV EETEEVQAVE INGVHVERGV  480
DSNFPSPMPT HPSSKVVAAP FNTPEGPHNP DKGKRKLNED SCFRKKSKPS NCEKAISIED  540
IVKDSNNNGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714020.10.0PREDICTED: DELLA protein GAI-like
TrEMBLA0A1U8LHK70.0A0A1U8LHK7_GOSHI; DELLA protein GAI-like
STRINGGorai.N015600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3546622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-28GRAS family protein