PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04405_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 638aa    MW: 74078.3 Da    PI: 5.9516
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04405_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS83.53.5e-26153283331
                        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                 +lLl+cA+a+++gdl+ a+a+L+++  la ++      R+++yf+ AL +r ++        l+p ++          ++++ 
  Cotton_A_04405_BGI-A2_v1.0  15 RLLLSCAKAIEDGDLKSADAFLQNILILADERPyLYKSRVVKYFADALVRRAYG--------LHPASS----------YFTFP 79 
                                 79**************************9998867899****************........222211..........22222 PP

                        GRAS  85 sevsPilkfshltaNqaI........le..avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskee 157
                                 ++ sP++  +  + N  I        +e  a+ g++r+H iDf+i +     + l++L + +++p  +R+  + +p  ++  +
  Cotton_A_04405_BGI-A2_v1.0  80 VDPSPYYHCGSYLINGVIenvihdalMEknALMGNRRLHLIDFSIPYSSFQNSVLRTLPTFSGDPLPVRVSYILPPFLKKYVK 162
                                 344444444444444433111100003222566779***************************************99999999 PP

                        GRAS 158 leetgerLakfAeelgvpf..efnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                  ++  e L+  A+e++v++  ef+v++ ++l++++ +e+++k+   +E+++V   ++l +l+++   +e      L  +k+++
  Cotton_A_04405_BGI-A2_v1.0 163 FSHQMEFLTMDAKEVNVKLedEFKVVYGNTLAEVDEREIDFKRrrdDEMVVVYYKFKLGKLVRDAKVMER----ELVRLKEIN 241
                                 9999999***********9555********************9999****************77777777....8999***** PP

                        GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                                 P++v++ +  ++h +++Fl+ + ++++y  +  d++++        +   ++e   ++ + + a eg++ + rh tl +W++ 
  Cotton_A_04405_BGI-A2_v1.0 242 PTIVIMLDFYSNHAHSNFLTCLEDSFQYSLKTVDCWAEL-------DLYFDEE--YEWECHIEAWEGNNVIRRHPTLTEWQHL 315
                                 ************************************665.......2233333..13335566789999999*********** PP

                        GRAS 319 leeaGFkpvplse 331
                                 +++aGF+ +pl++
  Cotton_A_04405_BGI-A2_v1.0 316 FSMAGFSRIPLNH 328
                                 *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.3551351IPR005202Transcription factor GRAS
PfamPF035141.2E-2315328IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MASSVFDTDT DTALRLLLSC AKAIEDGDLK SADAFLQNIL ILADERPYLY KSRVVKYFAD  60
ALVRRAYGLH PASSYFTFPV DPSPYYHCGS YLINGVIENV IHDALMEKNA LMGNRRLHLI  120
DFSIPYSSFQ NSVLRTLPTF SGDPLPVRVS YILPPFLKKY VKFSHQMEFL TMDAKEVNVK  180
LEDEFKVVYG NTLAEVDERE IDFKRRRDDE MVVVYYKFKL GKLVRDAKVM ERELVRLKEI  240
NPTIVIMLDF YSNHAHSNFL TCLEDSFQYS LKTVDCWAEL DLYFDEEYEW ECHIEAWEGN  300
NVIRRHPTLT EWQHLFSMAG FSRIPLNHRK GYKECPMFFL SAWKPKVEDE HLNFNSSNDK  360
FGQGFNPYPS PLRPLQPFPE GLTLSRVAAL AEIHDILNHL YCEHKFSWAL TWASKVDNMN  420
ETMSDPNKKY TFTIQSNSCY LKDLNSYKFM RSCEYKIEET IIEKALESKD GYHFEPSITR  480
FDIDDYMYLQ RAKNCDVDVV VAICLQNRYL CNDVYVVEFY WPTTESEISK SFTPRIFNDL  540
KYMEKKFVTV KVQSTEKAIS NIPTSSYTAR PLKIAEETED VDAVEINGVN VQRGVIPNFH  600
SPLTIQSSSK VVAAPSNTLE GPHNQGNSYR KFNQWSYA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837932e-42JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634158.10.0PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like
TrEMBLA0A2P5VTS70.0A0A2P5VTS7_GOSBA; Uncharacterized protein
STRINGGorai.005G014800.10.0(Gossypium raimondii)
STRINGGorai.005G015100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8809420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-25GRAS family protein