PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04404_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 394aa    MW: 45988.5 Da    PI: 5.0475
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04404_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS91.81.1e-28163664374
                        GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqR.laayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 lLl+cAea+++gdl+ a+++L ++  la ++    +R +++yf+ AL +r ++        l+p +++ +  ++   +  + +
  Cotton_A_04404_BGI-A2_v1.0  16 LLLSCAEAIEDGDLKSADKFLHNILILADERLYLYKRgVVKYFADALVRRAYG--------LHPASSNLTFPVDPSPY--YHY 88 
                                 8***************************999976666599*************........33333332222333222..344 PP

                        GRAS  86 evsPilkfshltaNqaIle..avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                 +   i  +   +   a++e  a+ g++r H iDf+i +     + l++L + +++p  +R+  + +p  +++ + ++  e L+
  Cotton_A_04404_BGI-A2_v1.0  89 NSNRINGVIENVIHGALMEknALMGNRRFHLIDFSIPYYDSQNSVLRTLPTFSGDPLPVRVSYILPPFLKEHVKFSHQMEFLT 171
                                 55555666666666677654478999****************************************9999999999999**** PP

                        GRAS 167 kfAeelgvpfe..fnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                 k A+e++v++e   +v++a++l++ +  e+++k+  +E+++V   ++l +++++  ++e      L  +k+++P++v++ +  
  Cotton_A_04404_BGI-A2_v1.0 172 KDAKEVNVKLEdeLKVVYANSLAEADEFEIDFKRreDEMVVVYYKFKLDKMVRDAKAMER----ELVRLKEINPTIVIMLDFY 250
                                 **********6337888999***********99999****************98888888....8999*************** PP

                        GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                                 ++h++++Fl+ f ++++y  + +d +++        + ++E+e   ++ +n+ a eg++ + rh tl +W++ +++aGF+ +p
  Cotton_A_04404_BGI-A2_v1.0 251 SNHTHSNFLTCFKDSFQYSLKTLDFWAQL-------ELFLEEE--YEWDCNIEAWEGNNVIRRHPTLTEWQHLFSMAGFSRIP 324
                                 **************************877.......7899999..57789********************************* PP

                        GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 l+++  +         +     + ee+++l+lg ++ +++++SaW+
  Cotton_A_04404_BGI-A2_v1.0 325 LNHRKDTLSVEDEDLLG----IMGEEEECLILGKEGCRMFFLSAWK 366
                                 *9887653322222222....33488999****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.9211350IPR005202Transcription factor GRAS
PfamPF035143.8E-2616366IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASSFFDIDI DTALGLLLSC AEAIEDGDLK SADKFLHNIL ILADERLYLY KRGVVKYFAD  60
ALVRRAYGLH PASSNLTFPV DPSPYYHYNS NRINGVIENV IHGALMEKNA LMGNRRFHLI  120
DFSIPYYDSQ NSVLRTLPTF SGDPLPVRVS YILPPFLKEH VKFSHQMEFL TKDAKEVNVK  180
LEDELKVVYA NSLAEADEFE IDFKRREDEM VVVYYKFKLD KMVRDAKAME RELVRLKEIN  240
PTIVIMLDFY SNHTHSNFLT CFKDSFQYSL KTLDFWAQLE LFLEEEYEWD CNIEAWEGNN  300
VIRRHPTLTE WQHLFSMAGF SRIPLNHRKD TLSVEDEDLL GIMGEEEECL ILGKEGCRMF  360
FLSAWKPKVE EEHLNFNSSK DKLGQGTFLF HFFN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837933e-37JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632580.10.0PREDICTED: DELLA protein GAI-like
TrEMBLA0A1U8LHD00.0A0A1U8LHD0_GOSHI; uncharacterized protein LOC107927488 isoform X2
STRINGGorai.005G014000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8809420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-30GRAS family protein