PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04290_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 735aa MW: 80358.6 Da PI: 6.4015

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04290_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	418.9	4.5e-128	366	722	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 +lLl+cAeavs +++e+a+++L +ls+l++p g++ qR+aayf eA++arl++s+ +++++lpp+++s++++++ ++a+++f Cotton_A_04290_BGI-A2_v1.0 366 LTLLLQCAEAVSVNKFEEANRMLLELSQLSTPFGTSAQRVAAYFSEAMSARLLSSCLGICATLPPNPQSQSHTQKIVSAFQVF 448 579****************************************************************************** PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167 + +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g s e+le+tg+rL++ Cotton_A_04290_BGI-A2_v1.0 449 NGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSD 527 *************************************************************....9********* PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 fA++lg+pf+f + va+++ +le+e+L+v++ Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq++ +++ Cotton_A_04290_BGI-A2_v1.0 528 FADKLGLPFQFYP-VADKVGNLEPERLKVSKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLRRLAPKVVTVVEQDLRRQE 603 *********.7*********************9..999999999999....******************** PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 ++Fl rf+ea++yysa+fdsl a++++eseer++vE++ll++ei+nv+a g + ++++Wre+l+++GFk ++l +a Cotton_A_04290_BGI-A2_v1.0 604 GPFLGRFVEAIHYYSAVFDSLGASYGEESEERHVVEQQLLSKEIRNVLALGGGS-----MKFHNWREKLQQCGFKGISLAGNA 681 ************************************************98.....78****************** PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 a+qa lll +++s+gy++ e++g+l lgWkd L+++SaWr Cotton_A_04290_BGI-A2_v1.0 682 ATQATLLLGMFPSHGYTLVEDNGALKLGWKDLCLLTASAWR 722 **************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.174	339	702	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-125	366	722	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MGASDLVDEN HSEINGSSNS RGHPVAVANN TSDGKMMRKR MASEIADNQR FPRRTLASEP 60 EPDNNTVCSF LPAPASSNPL LNHSTIKMNT AIFPSANFIA VTSGGPAVLS TTTSTFTCID 120 TISTSKPHPP AICGFSGLPL FPPTDRNRNS VTATTASDSV IISPISNSMD DTSATVWIDG 180 VIRDLIHTSS NVSISQIIHN VREIIYPCNP NLATLLEYRL RSLVDPVERR SKEGEASLLQ 240 RNHSQQQGSS GLTFNLDPAL GSLPNCSLPE SCSMSQYLNW EINPLSVSNS AVATQHQHHN 300 QISSSPSAQP LPVPEENPSP VEKTTPSTTA CTTPTSTFQI VQACSARDRK EEIRQQKRDE 360 EGLHLLTLLL QCAEAVSVNK FEEANRMLLE LSQLSTPFGT SAQRVAAYFS EAMSARLLSS 420 CLGICATLPP NPQSQSHTQK IVSAFQVFNG ISPFVKFSHF TANQAIQEAF EREERVHIID 480 LDIMQGLQWP GLFHILASRP GGPPHVRLTG LGTSLEALEA TGKRLSDFAD KLGLPFQFYP 540 VADKVGNLEP ERLKVSKTEA VAVHWLQHSL YDVTGSDTNT LWLLRRLAPK VVTVVEQDLR 600 RQEGPFLGRF VEAIHYYSAV FDSLGASYGE ESEERHVVEQ QLLSKEIRNV LALGGGSMKF 660 HNWREKLQQC GFKGISLAGN AATQATLLLG MFPSHGYTLV EDNGALKLGW KDLCLLTASA 720 WRPGEDTLPF QFHAN

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MGASDLVDEN HSEINGSSNS RGHPVAVANN TSDGKMMRKR MASEIADNQR FPRRTLASEP  60
EPDNNTVCSF LPAPASSNPL LNHSTIKMNT AIFPSANFIA VTSGGPAVLS TTTSTFTCID  120
TISTSKPHPP AICGFSGLPL FPPTDRNRNS VTATTASDSV IISPISNSMD DTSATVWIDG  180
VIRDLIHTSS NVSISQIIHN VREIIYPCNP NLATLLEYRL RSLVDPVERR SKEGEASLLQ  240
RNHSQQQGSS GLTFNLDPAL GSLPNCSLPE SCSMSQYLNW EINPLSVSNS AVATQHQHHN  300
QISSSPSAQP LPVPEENPSP VEKTTPSTTA CTTPTSTFQI VQACSARDRK EEIRQQKRDE  360
EGLHLLTLLL QCAEAVSVNK FEEANRMLLE LSQLSTPFGT SAQRVAAYFS EAMSARLLSS  420
CLGICATLPP NPQSQSHTQK IVSAFQVFNG ISPFVKFSHF TANQAIQEAF EREERVHIID  480
LDIMQGLQWP GLFHILASRP GGPPHVRLTG LGTSLEALEA TGKRLSDFAD KLGLPFQFYP  540
VADKVGNLEP ERLKVSKTEA VAVHWLQHSL YDVTGSDTNT LWLLRRLAPK VVTVVEQDLR  600
RQEGPFLGRF VEAIHYYSAV FDSLGASYGE ESEERHVVEQ QLLSKEIRNV LALGGGSMKF  660
HNWREKLQQC GFKGISLAGN AATQATLLLG MFPSHGYTLV EDNGALKLGW KDLCLLTASA  720
WRPGEDTLPF QFHAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	349	723	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632616.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A1U8MEP7	0.0	A0A1U8MEP7_GOSHI; protein SCARECROW-like
STRING	Gorai.005G001300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8164	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein