PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04284_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | EIL | ||||||||
Protein Properties | Length: 614aa MW: 69535.3 Da PI: 5.6671 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 515.3 | 2.6e-157 | 50 | 423 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkp 83 +el++rmw+d+m+lkrlke++k+ k+ ++ k+++s+eqar+kkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkp Cotton_A_04284_BGI-A2_v1.0 50 DELERRMWRDKMRLKRLKEQNKS----KDG-VDIVKQRQSQEQARKKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKP 127 79*******************98....666.99************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT CS EIN3 84 vegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplek 166 v+gasd+Lr+WWk+kv+fdrngpaai+kyqa+nli++++++++ ++h+l+elqDTtlgSLLsalmqhcdppqrrfplek Cotton_A_04284_BGI-A2_v1.0 128 VTGASDNLREWWKDKVRFDRNGPAAIAKYQADNLIPGNNDGCNP-IGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEK 209 ******************************************88.9************************************* PP --HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHH CS EIN3 167 gvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsv 249 gv pPWWPtG+e+ww++lgl+kdqg+ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l++ Cotton_A_04284_BGI-A2_v1.0 210 GVHPPWWPTGNEEWWPHLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAI 292 *********************************************************************************** PP HTTTTT-S--XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX........................... CS EIN3 250 lnqeekecatvsahss...slrkqspkvtlsceqkedvegkkeskikhvqavktta........................... 302 +nqee ++++++++s s+ +s ++++++ +++dveg +++ +vq+ k + Cotton_A_04284_BGI-A2_v1.0 293 INQEETLARELYPESCpplSSGGGSGSLVINDCSEYDVEGADNEPNFDVQELKPGNlsssdlsvdrmraiqqppysikgevvn 375 **************444456666****************777777699******99*************************** PP XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 303 gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 ++++ rkrk ++ + ++++ k ++ c+ q++++e +l+f+d+ ++++++ Cotton_A_04284_BGI-A2_v1.0 376 NLDFMRKRK-PSNDLNIMEHK--IYKCEFFQCPYNEHRLGFHDRAARDSHQ 423 ********9.77777777666..6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 5.8E-130 | 50 | 297 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 7.1E-76 | 171 | 307 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 5.62E-62 | 176 | 300 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MMMFDDMGIC GDMDFFSAPF GEKDAATATL AASHAEPVED DYSDEEIDVD ELERRMWRDK 60 MRLKRLKEQN KSKDGVDIVK QRQSQEQARK KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI 120 IPEKGKPVTG ASDNLREWWK DKVRFDRNGP AAIAKYQADN LIPGNNDGCN PIGPTPHTLQ 180 ELQDTTLGSL LSALMQHCDP PQRRFPLEKG VHPPWWPTGN EEWWPHLGLP KDQGPPPYKK 240 PHDLKKAWKV GVLTAVIKHM SPDIAKIRKL VRQSKCLQDK MTAKESATWL AIINQEETLA 300 RELYPESCPP LSSGGGSGSL VINDCSEYDV EGADNEPNFD VQELKPGNLS SSDLSVDRMR 360 AIQQPPYSIK GEVVNNLDFM RKRKPSNDLN IMEHKIYKCE FFQCPYNEHR LGFHDRAARD 420 SHQLTCPYRN SSALFSGSSF NVNEVKPVIL PQAFAQSKPT APAVTSVPTS FDLSGLGVPE 480 DGQKMISELM SVYDNNIQGN KNMNPSNNPI TEGQNILHPK IQQPQDEYFR GQGNFFEDSS 540 MPNNHQMFQQ GEGQFDRFKG LNSPFETEHN NNNNNSFPLM FGSPFDLSTF DYKEDLQTVG 600 MDTIPRQDVS IWFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 8e-85 | 175 | 307 | 2 | 134 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 8e-85 | 175 | 307 | 2 | 134 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526993 | 0.0 | HQ526993.1 Gossypium herbaceum clone NBRI_B_3211 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641724.1 | 0.0 | PREDICTED: protein ETHYLENE INSENSITIVE 3-like | ||||
Refseq | XP_017641725.1 | 0.0 | PREDICTED: protein ETHYLENE INSENSITIVE 3-like | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A1U8MZP3 | 0.0 | A0A1U8MZP3_GOSHI; protein ETHYLENE INSENSITIVE 3-like | ||||
STRING | Gorai.003G140600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2135 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |