PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03966_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 166aa    MW: 18586.2 Da    PI: 6.5099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03966_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1270116354
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 ++h+e+ErrRR+riN  +++Lr+llP +     +K++Ka+ L ++v+ +k+L
  Cotton_A_03966_BGI-A2_v1.0  70 KSHSEAERRRRERINAHLDTLRTLLPYR-----EKMDKATLLGEVVRQVKEL 116
                                 58*************************8.....8***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.42167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1271118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1371122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-480119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAAYYFNDNI FLSGNCYSGF LDPFSRDLGP CNGISQSLVL DNEKSELVVK SPVKVGKKSV  60
SEEKVIAALK SHSEAERRRR ERINAHLDTL RTLLPYREKM DKATLLGEVV RQVKELKKAA  120
TEASKGFLVP VDDDEVIVET CNDEANGTYC FKASICCDYR PQLLTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711462.11e-118PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1U8LA241e-117A0A1U8LA24_GOSHI; transcription factor bHLH30-like
STRINGGorai.011G034000.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155811017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-21bHLH family protein