 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_03939_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
ERF |
| Protein Properties |
Length: 238aa MW: 26603 Da PI: 7.2942 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_03939_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 63.7 | 4e-20 | 96 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa+a+++a+++++g
Cotton_A_03939_BGI-A2_v1.0 96 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAARAYDKAALRIRG 146
7********.**********3...2234*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MAVESRQDTA SDKLLLEHVW ANFIGGKEPN TAAEPSMETL ERLPSLGRWI SMGADAWEGL 60
LDGIIPSGNK IDQSCNDKTS SKVCSMRVDK VATTRHYRGV RRRPWGKYAA EIRDSSRKGA 120
RVWLGTFETA EEAARAYDKA ALRIRGPKAY LNFPLETVAN KATMVDNSRT GLGCVGNVPN 180
DRKRGCRDWE QNREFVMVEQ PTMKRMASVA EQVVEDGYGL FEFPDLGSDY LESLLSSF
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX584541 | 1e-87 | JX584541.1 Gossypium hirsutum clone NBRI_GE17876 microsatellite sequence. |
