PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_03939_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26603 Da PI: 7.2942 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 4e-20 | 96 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa+a+++a+++++g Cotton_A_03939_BGI-A2_v1.0 96 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAARAYDKAALRIRG 146 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 95 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.553 | 96 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-24 | 96 | 156 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.27E-30 | 96 | 154 | No hit | No description |
Pfam | PF00847 | 7.6E-15 | 96 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 96 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAVESRQDTA SDKLLLEHVW ANFIGGKEPN TAAEPSMETL ERLPSLGRWI SMGADAWEGL 60 LDGIIPSGNK IDQSCNDKTS SKVCSMRVDK VATTRHYRGV RRRPWGKYAA EIRDSSRKGA 120 RVWLGTFETA EEAARAYDKA ALRIRGPKAY LNFPLETVAN KATMVDNSRT GLGCVGNVPN 180 DRKRGCRDWE QNREFVMVEQ PTMKRMASVA EQVVEDGYGL FEFPDLGSDY LESLLSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 92 | 157 | 1 | 66 | ATERF1 |
3gcc_A | 1e-27 | 92 | 157 | 1 | 66 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584541 | 1e-87 | JX584541.1 Gossypium hirsutum clone NBRI_GE17876 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648699.1 | 1e-178 | PREDICTED: ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | A0A1U8L964 | 1e-176 | A0A1U8L964_GOSHI; ethylene-responsive transcription factor ERF091 | ||||
STRING | Gorai.008G219300.1 | 1e-173 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 2e-37 | ERF family protein |