PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03906_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 186aa    MW: 20903.5 Da    PI: 9.415
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03906_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-111465255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                                r+  + +Er+RR++++  ++eL +l+P+    +s+   s  + L +A +YIk Lq
  Cotton_A_03906_BGI-A2_v1.0 14 RTDRKLIERNRRNHMKALYSELNSLVPHY---NSREsISLPDQLGEAANYIKRLQ 65
                                778899**********************7...55555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.4651264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-71269No hitNo description
SuperFamilySSF474591.57E-131385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-81465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-131478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-51870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEINNNNPNN MSSRTDRKLI ERNRRNHMKA LYSELNSLVP HYNSRESISL PDQLGEAANY  60
IKRLQTNLER MKQRKDSLIS GGQTMNIASS STGFSPKVPQ IQIHEMGSSL VIGLTTDTHS  120
RFIFNDTIRI LHEEGADIVN ASFSVVGNTA FHTIHLTVGE LTPDYHGAAV TRIAQRLNKF  180
IYDAHA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5899771e-133JX589977.1 Gossypium hirsutum clone NBRI_GE24781 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647845.11e-136PREDICTED: uncharacterized protein LOC108488038
TrEMBLA0A2P5Y2B81e-134A0A2P5Y2B8_GOSBA; Uncharacterized protein
STRINGGorai.011G028400.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-43bHLH family protein