PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_03825_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 268aa MW: 31288.2 Da PI: 6.3805

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03825_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.9	3.9e-16	21	102	2	82
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessst 78 Wt+qe+l Li+a++e++ +l+r+klk+ +W+ev + + +++ qC++k+e+l+ ry+ +++g ++ + Cotton_A_03825_BGI-A2_v1.0 21 WTHQETLNLIQAYQEKWYSLQRSKLKAWQWQEVVVTVavrcghLDDSPAKTALQCRHKMEKLRCRYRSERQGLASG-----AH 98 ******************************99988888888777789999********************97.....46 PP trihelix 79 cpyf 82 +py+ Cotton_A_03825_BGI-A2_v1.0 99 WPYY 102 8888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-15	20	103	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MSNISPVADP TPGKKSQPLP WTHQETLNLI QAYQEKWYSL QRSKLKAWQW QEVVVTVAVR 60 CGHLDDSPAK TALQCRHKME KLRCRYRSER QGLASGAHWP YYPISARPLA SLVPTRGLNC 120 YSENGHEAGN NYYSNYVVEE EQEDYYYDDE EENNQFSKSR SINNILRRPS AVNRFSGFLS 180 GKERIRGEED GDNDVAVVAM EEENKEMALA VEIRRFDEKL MWVERKRMEM MRETERLRME 240 MENTRIEMIL DANKKFVDVI SASFGSNK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487775.1	1e-160	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A2P5SFK2	1e-168	A0A2P5SFK2_GOSBA; Uncharacterized protein
STRING	Gorai.007G154900.1	1e-159	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	8e-38	Trihelix family protein