PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03791_BGI-A2_v1.0
Common NameF383_03769
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 547aa    MW: 59537.5 Da    PI: 7.0299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03791_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09352399455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Cotton_A_03791_BGI-A2_v1.0 352 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 399
                                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-17346417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-10346403No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16348416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6352399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MENQFFVNAG IQSPAPPLHF GSSMPMSDWQ SLSSAMEIQS QDCFPTPNWE KPTDYSLQFE  60
SALSSMVSSP AASNCNVSSE SLIIRELIGK LGSIGNGGEI PPHSQPLLAS YINVNNSSNT  120
SCYSTPLNSP PKLNLTMVDS LVKEKLPAMG LNSSVADFSA DPGFAERAAK FSCFGSRSFN  180
GRTTQFGPKD NTEFAAYRSN PLAANAKLPR VSSSPSIKAM VSQGTTTNKN TPLQDRSELA  240
NSQEESTVSE QNPNGEPGLK ASNSRKRKAV PKAKTKDTSS SPSANASKVQ VTEPNEASNE  300
KRCKLSDSNG NENGSAKAEE DAKGDKANNT KAPEPPKDYI HVRARRGQAT DSHSLAERVR  360
REKISERMKL LQNLVPGCNK VTGKALMLDE IINYVQSLQR QVEFLSMKLA SVNTRLDFNV  420
ESLMSKDIFQ PNNTLQQPIF PINSSASTFF GHQPQQNPAL HSNMSNGTMT QCSVDPLDTA  480
ICPKLNTHLP QINQFVETVP PQYPTFCEGD LETIVHMGLA QNQSQDMALH SQNFQGSNQV  540
SHMKVEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628375.10.0PREDICTED: transcription factor bHLH62 isoform X2
TrEMBLA0A1U8L1200.0A0A1U8L120_GOSHI; transcription factor bHLH62-like isoform X1
STRINGGorai.007G157700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-134bHLH family protein