PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03694_BGI-A2_v1.0
Common NameF383_00778
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 539aa    MW: 60562.6 Da    PI: 5.7661
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03694_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.61.6e-1391695391374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l+++L+ cA+a+s++dl +aq+l+ +l+ ++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s++ l+++++
  Cotton_A_03694_BGI-A2_v1.0 169 LKQVLVFCAKAMSDNDLLMAQWLMDELRRMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPK---SADLLSYMHI 248
                                 5799*****************************************************************9...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++ev+P+lkf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp +RiTg+++++s   +   l+ +g+r
  Cotton_A_03694_BGI-A2_v1.0 249 LYEVCPYLKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPYIRITGIDDSTSAyaRGGGLNIVGKR 331
                                 ******************************************************************998899999******** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L+k+A+ ++vpfef++ +a +  +++ e+L+v+pgEalaVn++++lh+++desvs+e++rd++L+lvkslsPkvv++veqe++
  Cotton_A_03694_BGI-A2_v1.0 332 LSKLARYFKVPFEFHA-AAMSGCEVQREHLQVRPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESN 413
                                 ****************.89999************************************************************* PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++F++rfle+l+yy+a+f+s++++lpre++eri vE+++l+r++vn++acegaer+erhe l+kWr+r+++aGF+p+pls
  Cotton_A_03694_BGI-A2_v1.0 414 TNTAPFFARFLETLNYYTAMFESIDVTLPREHKERIDVEQQCLARDVVNIIACEGAERVERHELLGKWRSRFRMAGFTPYPLS 496
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 + +++++k+ll+++ ++ yr+ee++g+l+lgW++r Lv+ +aW+
  Cotton_A_03694_BGI-A2_v1.0 497 SLVNATIKTLLENYCDR-YRLEERDGALYLGWMNRDLVASCAWK 539
                                 ***************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.183143520IPR005202Transcription factor GRAS
PfamPF035145.4E-137169539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQASQQHRSS VMASRLYRQI KQEVEPEPYW FPQLPPIDPS LCYSDSSHEF HFTVESSNEN  60
FCTLESSSAN GSYNAYNSTS LVGFSPNGSP TSQQDSQSYP SDLHHSPDNN GGSPISGSCV  120
TDDVSDLRDK LKELETVMLG PDSDVIDSKT SPEMGTWRLV TDAISRGDLK QVLVFCAKAM  180
SDNDLLMAQW LMDELRRMVS VSGEPIQRLG AYMLEGLVAR LASSGSSIYK ALRCKEPKSA  240
DLLSYMHILY EVCPYLKFGY MSANGAIAEA MKDEDRVHII DFQIAQGSQW ITLIQAFAAR  300
PGGPPYIRIT GIDDSTSAYA RGGGLNIVGK RLSKLARYFK VPFEFHAAAM SGCEVQREHL  360
QVRPGEALAV NFAFMLHHMP DESVSTENHR DRLLRLVKSL SPKVVTLVEQ ESNTNTAPFF  420
ARFLETLNYY TAMFESIDVT LPREHKERID VEQQCLARDV VNIIACEGAE RVERHELLGK  480
WRSRFRMAGF TPYPLSSLVN ATIKTLLENY CDRYRLEERD GALYLGWMNR DLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-6317653825377Protein SCARECROW
5b3h_D5e-6317653825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630637.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_017630638.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_017630639.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0B0PAZ90.0A0A0B0PAZ9_GOSAR; Scarecrow-like transcription factor PAT1
STRINGGorai.007G167000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]