PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03649_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 294aa    MW: 32743.1 Da    PI: 9.4985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03649_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11130177455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR++i +++e+L++l+P +    +k   Ka iL + ++Y++sL+
  Cotton_A_03649_BGI-A2_v1.0 130 SHSLAERVRRKKISERMEKLQRLVPGC----DKITGKALILDEIINYVQSLE 177
                                 8*************************9....899***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-17124194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-10124181No hitNo description
PROSITE profilePS5088815.974126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17126194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-9130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MASFSTKSNP FLIDSIFSPH KISGSVGEIE NLNFNWVYSN NNEPSGSIFK KQSSTGEFTV  60
VDDIVALTSK KRRAKNGVKD EKEGKPKNQK KGNDEKKVYK GSKKDRKKGG EEPPNGYIHV  120
RARRGQATDS HSLAERVRRK KISERMEKLQ RLVPGCDKIT GKALILDEII NYVQSLESQV  180
EFLSMKLATL NPMFYDLGVD LEAFMVKPEI VNNVSSPTQC NPTQPITTTA AAAAIGTMAT  240
FTPTNNIPLL DTSASLLFHQ GEMSAVFSQF QDNGSVLWEE EGLRQEFPNP FRSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974KKRRAK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646866.10.0PREDICTED: transcription factor bHLH137 isoform X1
TrEMBLA0A2P5Y9F60.0A0A2P5Y9F6_GOSBA; Uncharacterized protein
STRINGGorai.001G054900.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-53bHLH family protein