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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cotton_A_03573_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
NAC |
| Protein Properties |
Length: 335aa MW: 39019.7 Da PI: 6.9268 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_03573_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 179.7 | 7.3e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80
+ppGfrFhPtdeelv +yL+kk+++++++l +vi++vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++
Cotton_A_03573_BGI-A2_v1.0 7 VPPGFRFHPTDEELVAYYLRKKITSRRIDL-DVIRDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAA 88
69****************************.9***************954555442556************************ PP
NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
g+Wkatg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
Cotton_A_03573_BGI-A2_v1.0 89 GFWKATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
**************.8899****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MNAFSQVPPG FRFHPTDEEL VAYYLRKKIT SRRIDLDVIR DVDLYKIEPW DLQELCRIGT 60
EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120
PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRIPA ISKVSQYESP CWYDDQVSFT 180
PDLASPMQNM AYHHLPYSCK KELDLQYQAP NEHYLQLPLL DSPKLLHPPV EAFGLDINNA 240
STLQETHEQH LQTLYANTNN EHAADQVTDW RILDKFVASQ LSQEEVAKQN NYSSASAKNV 300
FHSSQHANLL IRHLNKQEMA PENASTSNRH TDLWK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-50 | 7 | 160 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-50 | 7 | 160 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-50 | 7 | 160 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-50 | 7 | 160 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-50 | 7 | 160 | 17 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 5e-50 | 7 | 160 | 17 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC847206 | 0.0 | KC847206.1 Gossypium hirsutum NAC domain protein NAC29 mRNA, complete cds. |
