PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03563_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 567aa MW: 62222.3 Da PI: 9.5069

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03563_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.5	4e-09	220	280	20	81
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 ++ rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y Cotton_A_03563_BGI-A2_v1.0 220 QSTRGKTRADKDREVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 280 667889999999**************************************9965555.3445 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MGGNKGDATK KQTPQPTQQL SSSPKEPLEE SSESRQKHLQ QPSAVVVTAT GPPFISAPLY 60 VPTGATSSPF EQQFESVNPK RSRYNSGQWK LLPSSSSLQS QAQMAIITSE SSPSPTNPIN 120 PQTQAQTTAA SSSDAASSPP HSPLPSTTSG QETNKPEDQQ FHHQFRKGKY VSPVWKPNEM 180 LWLARAWRIQ YQGGSDASGS SSRSGHQEIG PFTGSDLAVQ STRGKTRADK DREVAEFLNK 240 HGINRDAKTA GTKWDNMLGE FRKVYEWERG GEREQVGKSY FRLSPYERKL HRLPASFDEE 300 VFEELSHFMG PRMRTSQSRG ASAIASSDDG RSVLSGPRPL PPAPPFKVDE LPLSVRTKQL 360 VTTTGGDAFF HGTRGSLVGF DTSLDVGLGL PSSSSKELRR IGKIRMTWEE SVSLWAEESE 420 HHRGRVRLQG SSFLNADELT FFDDSVVACT MEAFEDGPLK GFSVDRFVNG QQVKVFGRRK 480 SSAASASSVT GMFVNVTNSE TFQESPSKSH SLSLSMNQVS LKERSFPLQN PLSDVSPIKT 540 VVSSLNIAIE SKKYFDFSMA TSEKVLL

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MGGNKGDATK KQTPQPTQQL SSSPKEPLEE SSESRQKHLQ QPSAVVVTAT GPPFISAPLY  60
VPTGATSSPF EQQFESVNPK RSRYNSGQWK LLPSSSSLQS QAQMAIITSE SSPSPTNPIN  120
PQTQAQTTAA SSSDAASSPP HSPLPSTTSG QETNKPEDQQ FHHQFRKGKY VSPVWKPNEM  180
LWLARAWRIQ YQGGSDASGS SSRSGHQEIG PFTGSDLAVQ STRGKTRADK DREVAEFLNK  240
HGINRDAKTA GTKWDNMLGE FRKVYEWERG GEREQVGKSY FRLSPYERKL HRLPASFDEE  300
VFEELSHFMG PRMRTSQSRG ASAIASSDDG RSVLSGPRPL PPAPPFKVDE LPLSVRTKQL  360
VTTTGGDAFF HGTRGSLVGF DTSLDVGLGL PSSSSKELRR IGKIRMTWEE SVSLWAEESE  420
HHRGRVRLQG SSFLNADELT FFDDSVVACT MEAFEDGPLK GFSVDRFVNG QQVKVFGRRK  480
SSAASASSVT GMFVNVTNSE TFQESPSKSH SLSLSMNQVS LKERSFPLQN PLSDVSPIKT  540
VVSSLNIAIE SKKYFDFSMA TSEKVLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633784.1	0.0	PREDICTED: uncharacterized protein LOC108476171
TrEMBL	A0A1U8K3U4	0.0	A0A1U8K3U4_GOSHI; uncharacterized protein LOC107913165
STRING	EOY23024	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein