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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_03518_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
YABBY |
Protein Properties |
Length: 157aa MW: 17841.2 Da PI: 10.2012 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_03518_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 175.6 | 3.1e-54 | 17 | 149 | 24 | 170 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsened 106
vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ + +++++++ ++++ +t+ s+ s+n +
Cotton_A_03518_BGI-A2_v1.0 17 VSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV----------QAASYATQDYRTDLGSSSKCNTKFSMRAPSKNAT 89
9***************************99999999884..........3444445555555555555555566655567777 PP
YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
Cotton_A_03518_BGI-A2_v1.0 90 EERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 149
6655....8*****************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 157 aa
Download sequence Send
to blast |
MRYKIRPAPP LRLSQGVSVP CSSLFDIVTV RCGHCTNLWS VNMAAAFQSL SWQDVQAASY 60 ATQDYRTDLG SSSKCNTKFS MRAPSKNATE ERVVNRPPEK RQRVPSAYNQ FIKEEIQRIK 120 ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LENQKSN
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Functional Description ? help
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Source |
Description |
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |