PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03518_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 157aa    MW: 17841.2 Da    PI: 10.2012
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03518_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY175.63.1e-541714924170
                       YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsened 106
                                 vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++           +    +++++++   ++++ +t+ s+   s+n +
  Cotton_A_03518_BGI-A2_v1.0  17 VSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV----------QAASYATQDYRTDLGSSSKCNTKFSMRAPSKNAT 89 
                                 9***************************99999999884..........3444445555555555555555566655567777 PP

                       YABBY 107 eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                 ee      v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  Cotton_A_03518_BGI-A2_v1.0  90 EERV----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 149
                                 6655....8*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.6E-6017149IPR006780YABBY protein
SuperFamilySSF470953.01E-892142IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.7E-597143IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MRYKIRPAPP LRLSQGVSVP CSSLFDIVTV RCGHCTNLWS VNMAAAFQSL SWQDVQAASY  60
ATQDYRTDLG SSSKCNTKFS MRAPSKNATE ERVVNRPPEK RQRVPSAYNQ FIKEEIQRIK  120
ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LENQKSN
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604642.11e-103PREDICTED: axial regulator YABBY 5-like isoform X1
RefseqXP_017604702.11e-103PREDICTED: axial regulator YABBY 5-like isoform X1
RefseqXP_017604753.11e-103PREDICTED: axial regulator YABBY 5-like isoform X1
RefseqXP_017604802.11e-103PREDICTED: axial regulator YABBY 5-like isoform X1
SwissprotQ8GW465e-75YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A1U8M1V21e-101A0A1U8M1V2_GOSHI; axial regulator YABBY 5-like
STRINGGorai.001G042700.11e-100(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-77YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]