PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03389_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 293aa    MW: 32451.6 Da    PI: 9.0078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03389_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-203484256
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  Cotton_A_03389_BGI-A2_v1.0 34 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84
                                589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-153484IPR001471AP2/ERF domain
SMARTSM003807.9E-373497IPR001471AP2/ERF domain
CDDcd000181.76E-313491No hitNo description
Gene3DG3DSA:3.30.730.101.9E-283492IPR001471AP2/ERF domain
PROSITE profilePS5103220.5343491IPR001471AP2/ERF domain
PRINTSPR003672.9E-73546IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-203591IPR016177DNA-binding domain
PRINTSPR003672.9E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAGPESTTKT TTVITNTDNS TTTMAQPLTK PTRRFVGVRQ RPSGRWVAEI KDSSQRVRLW  60
LGTYDTPEEA ARAYDEAARA LRGENARTNF ASVNNSSTQP IISGSNGRQH GLSAFSSLKA  120
KLSKNLQSIM ARNGENKSTK SRVSDHFTFA SIFHFRNNQY HTNQDQNIHK VVQPSIVVPR  180
IGNEPPPPPP PQPPLSWDSS SVSDCSNEWI GFRQLGLDSD GSDIGEVSFR DHHGFSDEMM  240
GWIDSPDHHH NNISSRLISG DYDDDNHGSR SKRFKVSSSV VVPPTFSGSS YHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1434901471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6160810.0JX616081.1 Gossypium hirsutum clone NBRI_GE60472 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613536.10.0PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBLA0A1U8MNU70.0A0A1U8MNU7_GOSHI; ethylene-responsive transcription factor ESR1-like
STRINGGorai.008G116800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1829289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-17related to AP2 11